Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq9 279 6e-70 seq3 104 3e-17 seq7 98.7 1e-15 seq1 87.8 2e-12 >seq9 Length=941136 Score = 279 bits (308), Expect = 6e-70 Identities = 413/574 (72%), Gaps = 16/574 (3%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTAC 53251 ||||||| || ||| | ||||||||||||| | || | || | ||| |||||| ||| Sbjct 165678 TCATGCGTGTTGCCGTCGGTATCCACGGTGCCAACATTGACAAG-GTCATTGAGACTTAC 165620 Query 53252 GACTTAATG----AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGG 53307 | | ||| ||| | ||||| || |||||| | || ||||| |||||||| || Sbjct 165619 AATCTCATGTCTGAGCGA----TACTTCACCCACGCCTCCCCTACCCTCTTCAACGCCGG 165564 Query 53308 TACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGA 53367 ||| |||| || ||||| ||||||||| || || |||||||| |||||||| || Sbjct 165563 TACCCCCAACCCCCAAATGTCATCCTGCTTCCTTGTCGCCATGAAGGACGACTCGATTGA 165504 Query 53368 CGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427 || ||||||||||| |||||| || || || ||||||||| | || || ||||| Sbjct 165503 GGGGATCTACGAGACCCTCAAGACCTGCGCGCAGATCTCCAAGACTGCCGGAGGAATCGG 165444 Query 53428 TATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487 ||||| | |||||||| || || ||| | || || || ||||| | | Sbjct 165443 ACTCCACATCCACAACGTCCGCGCTAAGGGCTCGTATATTGCCGGTACCAACGGTTACTC 165384 Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547 | || ||||| || |||||||||| ||| || |||||| || || ||| |||| || Sbjct 165383 GAACGGTATCGTTCCCATGCTCCGCGCCTTTGACGCCACGGCGCGATATGTCGACCAAGG 165324 Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607 ||| ||||| ||| |||||||||||||||||||||| |||||||||||||| | Sbjct 165323 TGGAAACAAGCGACCGGGTGCGTTCGCCATCTACCTCGAGCCCTGGCACGCCGACATCTT 165264 Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGT 53666 ||||| ||||| || | ||| || ||| | |||||| | || ||| || ||||||| Sbjct 165263 CGAGTTCCTCGACTTGAGGAAGAACCACGGTAAAGAAGAGGTCCG-TGCTCGGGACCTGT 165205 Query 53667 T-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGG 53725 | ||| || || ||||| | |||||||||||| | || ||| ||||| || ||| Sbjct 165204 TCTAC-GCCCTCTGGATCTCCGACCTCTTCATGAAGCGTGTCGAGTCGGACGGTGACTGG 165146 Query 53726 TACCTGATGTG-CCCGAACGAGTGCCCCGGCCTC 53758 ||| ||||| |||| | ||||||||||| ||| Sbjct 165145 ACCCTCATGTGTCCCGCA-GAGTGCCCCGGTCTC 165113 >seq3 Length=1461739 Score = 104 bits (114), Expect = 3e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || ||||||| ||| || | ||||| || || | | |||||||| || || |||||| Sbjct 1187740 CCCTCATCTCGGCTGATGAGCTCATTGGAGAATGTCAATCCAGGCATCAGACCCCGCTTC 1187681 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 |||||||||||||| || |||||| || ||||||||||||||| || || || || Sbjct 1187680 TTCAACCAAAAGATAGCGGCGAAGGAGCCCGAGAAGAAGATGCCTTCTACGCAAGCGAAA 1187621 Query 74889 GCGACAAGGCGT 74900 ||||| |||||| Sbjct 1187620 GCGACTAGGCGT 1187609 >seq7 Length=1170885 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 152068 GCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACG 152127 || || || || ||||| || ||| ||| || || |||| ||||||| || ||| Sbjct 1133420 GCAAGACGGGTACCAAATTGACCATTCGGCGACAGCAGATTGATGTTGTTGCTTCCGACG 1133361 Query 152128 AAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCC 152187 || ||||| || | | || || ||| |||| |||||||||||| || ||||| Sbjct 1133360 AAGTTCTGGGCGAGACCAACGATAGTGGTAGTCAGAGACGCTTCACCGTGATGGTACGCG 1133301 Query 152188 GTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTC 152247 |||| ||| | || ||| || ||| |||||||||||| || ||| || ||| ||| | Sbjct 1133300 GTCTTCTCTGAGACGTAACCGACCAGCTGCGCCACCTTGATCTCCTTCTGCAGATTCCGC 1133241 Query 152248 TTGAGACAGGCGTAAATCACCTTGCGCTG 152276 |||| ||| |||| | || || ||||| Sbjct 1133240 TTGAAACAACCGTACAAGACTTTCCGCTG 1133212 >seq1 Length=4122216 Score = 87.8 bits (96), Expect = 2e-12 Identities = 184/270 (68%), Gaps = 7/270 (3%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 || || ||||| |||||||||||||| | ||| ||||||| |||||| || |||| Sbjct 3090358 AGACCGGGCATGAGTCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAG 3090299 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCA----TCGGA 74920 ||||| || ||||| |||||||||| ||||| | ||||| |||| | ||| Sbjct 3090298 AAGATACCCTCGACGGCGGCAAAGGCGATGAGGCGCTCGGCGAA-GGTGGACTTCTCGTC 3090240 Query 74921 AGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCG 74979 || ||||| || | ||||| || || || |||| ||| |||| || ||||| | Sbjct 3090239 TGTAATCCACTTCAGCGCCCAGTCGGCCTTCTTCTTGA-TGCAGGGGATGGTGTCGATGG 3090181 Query 74980 CTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGT 75039 | | |||||| | | |||| ||||||| | ||||||| | || |||| Sbjct 3090180 CGTCAAAGAGGTAGGTCCGGCGAGCGGGGTCCTTGATGTAGGTGTCAATAAGGAGGGAGT 3090121 Query 75040 ACGTCTCCGAATGAATCGACTCGTTGAACG 75069 | ||||| || || || ||| |||||| Sbjct 3090120 AGGTCTCGGAGTGGATATTCTCCCTGAACG 3090091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215644309600