Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq9 304 1e-77 seq1 150 2e-31 seq4 125 8e-24 seq7 96.9 4e-15 >seq9 Length=941136 Score = 304 bits (336), Expect = 1e-77 Identities = 794/1201 (66%), Gaps = 15/1201 (1%) Strand=Plus/Plus Query 80561 TGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCT 80620 |||||| |||| || || ||| || | ||||||||| ||| | || ||||| || Sbjct 164494 TGCCCTGCGACATGGGGGAACCCTCGTATGTCTCGTACTTGCCGAGCTCCTGGGCCATCT 164553 Query 80621 CACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGC 80680 | |||||| || ||||| ||||| || || ||| |||| |||| | ||| Sbjct 164554 CGCACGACGCCTCGAGGGCGGCGTGGTAGATTGTCTCGAAGATCTGGATGTTGAGTTCGC 164613 Query 80681 GCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAA 80740 | || || ||||| | || || | |||||| | || || || ||||| | Sbjct 164614 GAGCGGCGGGAGATTCGAAGGGCATGCGGAGAGCCATGAAGGCATCGGCGAGACCCTGGA 164673 Query 80741 CGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAA 80800 | |||| ||| |||||||||||| |||| || || ||||| | || || Sbjct 164674 CACCGAGACCGACGGGGCGGTGGCGCATGTTGGAGTTCTGCGCCTCGATGACGGGATAGT 164733 Query 80801 AGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTT 80860 |||| | |||||| ||| || ||| || || ||| ||| | || || || | Sbjct 164734 AGTTTCGAGAGATGACCTGGTCCAAGTTCTTGGTGACGACCTTTGTGATCTCGTGGAGCT 164793 Query 80861 TCTGAAAGTCGAATT---GGTTCCCCTTC---ACAAATGCCGGAAGGCTCAGGGACGCCA 80914 ||| |||||| | | ||| || | || || || || ||| ||||| || | Sbjct 164794 TCTTGAAGTCGTAGACCCGCTTCTCCATGTCGACGAAAGCGGGGAGGGCGAGGGAGGCAA 164853 Query 80915 GATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAG 80974 |||| || || || ||||| |||| | | |||||| || || || || | || | Sbjct 164854 GATTACAGACAGCAACCTCGTCAGGCGCAGAGTACTCGATAATCTCGGTACAAAGGTTGG 164913 Query 80975 AAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGC 81034 | || ||||| ||||| || | || |||||| || |||||||| ||||||||||||| Sbjct 164914 AGGATTTAATCGTACCGAGATGTTGCTGGTTCGATTTGGCGTTCGCAGCGTCCTTGTAGA 164973 Query 81035 ACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCG 81094 |||| | || || |||||| ||| | || |||||||||| ||| | || | | Sbjct 164974 GCATGAAGGGACCGCCAGTCTCGGTCTGAGCCTCGAGGATGGCGAACCAGAGCTTCTGAG 165033 Query 81095 CCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCGTCGAAC 81153 | |||| ||| || || || | | | ||| |||| ||| | |||||| Sbjct 165034 CTTTGATGGTCTTTCGCCCCTTCCCAGCCTTCTCGTACGACTCGTACAGCGCC-TCGAAC 165092 Query 81154 TTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCG 81213 || | ||||| || | ||| | |||||||| || ||||| ||| |||||| Sbjct 165093 TTCTCCGAGTGAACATCGGCGAGACCGGGGCACTCTGCGGGACACATGAGGGTCCAGTCA 165152 Query 81214 GTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCG 81273 ||| ||| ||| ||||||||| ||| | ||||||||||||| ||||||||| Sbjct 165153 CCGTCCGACTCGACACGCTTCATGAAGAGGTCGGAGATCCAGAGGGCGTAGAACAGGTCC 165212 Query 81274 CG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTC 81332 || ||| || |||| || | ||| ||||| | ||| ||||| || || | |||||| Sbjct 165213 CGAGCA-CGGACCTCTTCTTTACCGTGGTTCTTCCTCAAGTCGAGGAACTCGAAGATGTC 165271 Query 81333 CGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACGG---CCACCCTGGTT 81389 || ||||| ||||| || || | ||||| || ||| || | ||||| |||| Sbjct 165272 GGCGTGCCAGGGCTCGAGGTAGATGGCGAACGCACCCGGTCGCTTGTTTCCACCTTGGTC 165331 Query 81390 GACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACC 81449 ||| || || || || |||| ||| | || | ||| || | |||||| | || | ||| Sbjct 165332 GACATATCGCGCCGTGGCGTCAAAGGCGCGGAGCATGGGAACGATACCGTTCGAGTAACC 165391 Query 81450 GTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCC 81509 ||| ||||| | ||| ||| ||||| ||||| || ||| ||| || ||||| || Sbjct 165392 GTTGGTACCGGCAATATACGAGCCCTTAGCGCGGACGTTGTGGATGTGGAGTCCGATTCC 165451 Query 81510 ACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCT 81569 || | ||| || ||||| || || || | |||||| || || ||||| || Sbjct 165452 TCCGGCAGTCTTGGAGATCTGCGCGCAGGTCTTGAGGGTCTCGTAGATCCCCTCAATCGA 165511 Query 81570 ATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATT 81629 || | |||||| | | | ||| ||| |||||| || ||| | | ||||| || Sbjct 165512 GTCGTCCTTCATGGCGACAAGGAAGCAGGATGACATTTGGGGGTTGGGGGTACCGGCGTT 165571 Query 81630 GAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTT 81689 ||| || || |||| ||||| |||| || || | ||||| || | || || || | Sbjct 165572 GAAGAGGGTAGGGGAGGCGTGGGTGAAGTATCGCTCAGACATGAGATTGTAAGTCTCAAT 165631 Query 81690 GACGCGTG-GAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGG 81748 ||| | || ||| | | ||||||| ||||||| || |||||||| | ||||| ||||| Sbjct 165632 GAC-CTTGTCAATGTTGGCACCGTGGATACCGACGGCAACACGCATGATCATGTGCTGGG 165690 Query 81749 G 81749 | Sbjct 165691 G 165691 >seq1 Length=4122216 Score = 150 bits (166), Expect = 2e-31 Identities = 139/176 (79%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||| || |||||||||||||| || || || || |||||||| Sbjct 3074508 ATGCAGATCTTCGTCAAAACTCTTACCGGCAAGACAATCACCCTCGAAGTTGAGTCGTCC 3074449 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || ||||||||||||||||| || || ||||||||| Sbjct 3074448 GACACCATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCACCAGACCAG 3074389 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 ||||| | ||||| |||||||||||| | ||||||| || || || | ||||| Sbjct 3074388 CAGCGATTGATTTTCGCTGGTAAGCAATTGGAGGATGGCCGCACTCTTTCCGACTA 3074333 Score = 136 bits (150), Expect = 5e-27 Identities = 123/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 |||||||||||||| || ||||||||||| ||||| || | ||| | ||| | ||| Sbjct 3074760 CTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCCGACACCATCGACAATGTCAAG 3074701 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || |||||||||||||| ||||||||||||||||||||| | || || || || Sbjct 3074700 GCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAGCAGCGTTTGATCTTCGCCGGG 3074641 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 ||||| || ||||| | ||| ||||| | ||||| Sbjct 3074640 AAGCAGCTTGAGGACGGTCGCACCCTTTCTGACTA 3074606 Score = 129 bits (142), Expect = 7e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || |||||||| || || || || || || ||||| | Sbjct 3074232 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAAACCATCACCCTCGAAGTCGAGTCCAG 3074173 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || | || || || || |||||||| ||||| ||||| |||||||| Sbjct 3074172 CGACACCATCGACAACGTTAAAGCCAAGATCCAGGACAAAGAGGGTATTCCCCCAGACCA 3074113 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| | ||||| || || || || ||||| || | || || || | ||||| || Sbjct 3074112 GCAGCGATTGATTTTCGCCGGCAAACAGCTCGAAGACGGGCGAACGCTTTCCGACTACAA 3074053 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620 |||| ||||| || || ||||| || || |||| Sbjct 3074052 CATCCAGAAGGAGTCTACACTTCACCTCGTTCTGCG 3074017 Score = 114 bits (126), Expect = 1e-20 Identities = 155/212 (73%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 27426 GCTT-ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGA 27484 |||| ||||| ||||| || ||||| || |||||||| || | || | ||| | | Sbjct 3073653 GCTTGACCGGAAAGACCATCACTCTCGAAGTTGAGTCGTCCGACACGATCGACAATGTCA 3073594 Query 27485 AGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTG 27544 |||| || || |||||||||||||| || || ||||||||||| || || || ||||| | Sbjct 3073593 AGGCGAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAGCAACGACTCATCTTTGCCG 3073534 Query 27545 GTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACT 27603 | ||||| || ||||| | | || | ||| ||||| || |||| ||||| ||| Sbjct 3073533 GGAAGCAGCTAGAGGACGGGAGGACGTTGAGC-GACTACAACATCCAGAAGGAGAGCACC 3073475 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 || || | || |||||||| || ||||| || Sbjct 3073474 CTGCACTTGGTGTTGCGTCTCCGTGGTGGTCA 3073443 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| |||||||||||||| ||||| || ||||| ||||| || | ||||| Sbjct 3075090 GTCAAGACCCTTACCGGCAAGACCATTACCCTCGAGGTCGAGTCCTCGGACACCATTGAC 3075031 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||||| || || |||||||||||||| || || |||||||||||||| | || Sbjct 3075030 AACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAGCAGCGATTGATC 3074971 Query 27538 TTTGCTGGTAAGCAACTCGAGGA 27560 || || || ||||| | ||||| Sbjct 3074970 TTCGCCGGCAAGCAGTTGGAGGA 3074948 Score = 93.3 bits (102), Expect = 5e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 27504 GGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGA 27563 |||||| ||||| ||||||||||||||||| ||||| || || || || | ||||| | Sbjct 3073855 GGAGGGCATTCCCCCAGACCAGCAGCGTCTCATTTTCGCCGGCAAACAGTTGGAGGACGG 3073796 Query 27564 TCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 || ||||| | ||||| ||| |||| ||||| |||||| | || | || | ||||| Sbjct 3073795 CCGAACCCTTTCCGACTACAATATCCAGAAGGAGTCCACTTTGCACTTGGTGCTTCGTCT 3073736 Query 27624 TCGCGGTGG 27632 || ||||| Sbjct 3073735 GCGTGGTGG 3073727 >seq4 Length=1296710 Score = 125 bits (138), Expect = 8e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 ||||| |||||||| || || || || || ||||| || | ||||| ||| | ||| Sbjct 543303 CTTACGGGCAAGACGATCACCCTCGAAGTCGAGTCGTCCGACACCATTGACAATGTCAAG 543244 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || |||||||||||||| || ||||||||||||||||| || || || || || Sbjct 543243 GCCAAGATCCAGGACAAGGAGGGTATCCCTCCAGACCAGCAGCGGCTCATCTTCGCCGGC 543184 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||| || ||||| | | ||||| | ||||| || |||| ||||| || || || Sbjct 543183 AAGCAGCTTGAGGACGGCAGGACCCTTTCCGACTACAACATCCAGAAGGAGTCTACCCTC 543124 Query 27607 CATCTAGTCTTG 27618 || || || ||| Sbjct 543123 CACCTGGTGTTG 543112 >seq7 Length=1170885 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 ||||| |||||||| || || || ||||| ||||| || | ||| | || | ||| Sbjct 1015377 CTTACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATCGACAACGTCAAG 1015436 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || |||||||||||||| || || |||||||||||||| | ||||| || || Sbjct 1015437 GCCAAGATCCAGGACAAGGAGGGTATCCCACCAGACCAGCAGCGATTGATTTTCGCCGGA 1015496 Query 27547 AAGCAACTCGAGGATG 27562 ||||| | ||||||| Sbjct 1015497 AAGCAGTTGGAGGATG 1015512 Score = 86.0 bits (94), Expect = 7e-12 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 31978 GTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAAC 32037 ||||| || || ||||||||| ||||| || || | |||| || ||||| ||| Sbjct 1133188 GTGGCCGATGGTCTCAAGCCTGGTCAGCGGAAAGTCTTGTACGGTTGTTTCAAGCGGAAT 1133247 Query 32038 CTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTAT 32097 ||| || || || ||||||||||||||| || ||||| ||||| | || || || Sbjct 1133248 CTGCAGAAGGAGATCAAGGTGGCGCAGCTGGTCGGTTACGTCTCAGAGAAGACCGCGTAC 1133307 Query 32098 CACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGT 32157 || ||||| || ||||| || ||| || || || || |||||||| ||||| Sbjct 1133308 CATCACGGTGAAGCGTCTCTGACTACCACTATCGTTGGTCTCGCCCAGAACTTCGTCGGA 1133367 Query 32158 GCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCG 32212 || ||| | || | || ||| ||| || ||||| ||||| || |||| Sbjct 1133368 AGCAACAACATCAATCTGCTGTCGCCGAATGGTCAATTTGGTACCCGTCTTGCCG 1133422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310029298240