Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq4 150 4e-31 seq1 145 2e-29 seq7 109 1e-18 >seq4 Length=1296710 Score = 150 bits (166), Expect = 4e-31 Identities = 146/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || ||||| || || ||||| || |||||||| || || | ||||||||| || || || Sbjct 543116 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCTGCCGTCCTCA 543175 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 ||||||||||| |||||||| || || || ||||| ||||| | || |||||||||||| Sbjct 543176 AGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCTGGAGGGATACCCTCCTTGTCCTGG 543235 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| || || || || |||||||| || || || ||||| ||||||||||| Sbjct 543236 ATCTTGGCCTTGACATTGTCAATGGTGTCGGACGACTCGACTTCGAGGGTGATCGTCTTG 543295 Query 211086 CCCGTGAG 211093 ||||| || Sbjct 543296 CCCGTAAG 543303 >seq1 Length=4122216 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || |||||||| || ||||| || |||||||| || || | ||| || | || ||| Sbjct 3074020 AGAACGAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGCGTTCGCCCGTCT 3074079 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| ||||| ||||| || | || || ||||| || |||| || || |||||| Sbjct 3074080 TCGAGCTGTTTGCCGGCGAAAATCAATCGCTGCTGGTCTGGGGGAATACCCTCTTTGTCC 3074139 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| ||||| ||||||||||| | || || ||||| ||||| || Sbjct 3074140 TGGATCTTGGCTTTAACGTTGTCGATGGTGTCGCTGGACTCGACTTCGAGGGTGATGGTT 3074199 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || ||||| ||||| || || | ||||||| Sbjct 3074200 TTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 3074232 Score = 122 bits (134), Expect = 2e-22 Identities = 137/181 (76%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCT 210969 ||| || ||| ||| || |||||||| || || | ||| | |||| || || || |||| Sbjct 3073469 GTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAACG-TCCTCCCGTCCTCTAGCT 3073527 Query 210970 GCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCT 211029 |||| || || ||||| || ||||| ||||| || || | || |||||||||||||||| Sbjct 3073528 GCTTCCCGGCAAAGATGAGTCGTTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCT 3073587 Query 211030 TTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCG 211089 | || || || ||||| ||||| || ||||| ||||||||||| |||||||| | Sbjct 3073588 TCGCCTTGACATTGTCGATCGTGTCGGACGACTCAACTTCGAGAGTGATGGTCTTTCCGG 3073647 Query 211090 T 211090 | Sbjct 3073648 T 3073648 Score = 109 bits (120), Expect = 1e-18 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998 || || | |||||| | || || || |||||||| || |||||||| | || || ||| Sbjct 3074606 TAGTCAGAAAGGGTGCGACCGTCCTCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGG 3074665 Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 || ||||||| || ||||||||||||||||| || || || ||||||||||| || Sbjct 3074666 TCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAA 3074725 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 || ||||| |||||||| ||||| || || || Sbjct 3074726 GACTCGACCTCAAGAGTGATGGTCTTGCCGGTAAG 3074760 Score = 107 bits (118), Expect = 4e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998 ||||| | | ||| | || || |||| ||||||||| |||||||| | || || ||| Sbjct 3074927 TAATCAGACAAGGTTCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATCAATCGCTGCTGG 3074986 Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 || || || | || ||||||||||||||||| || ||||| || |||||||| ||| Sbjct 3074987 TCTGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAG 3075046 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 || |||||||| || || ||||| || || || ||||| || Sbjct 3075047 GACTCGACCTCGAGGGTAATGGTCTTGCCGGTAAGGGTCTTGAC 3075090 Score = 96.9 bits (106), Expect = 8e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998 || || | ||| || | ||||| |||| ||||| || ||||| || | || || ||| Sbjct 3074333 TAGTCGGAAAGAGTGCGGCCATCCTCCAATTGCTTACCAGCGAAAATCAATCGCTGCTGG 3074392 Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 || || || | || ||||||||||| ||||| || || || || |||||||| || Sbjct 3074393 TCTGGTGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCGGAC 3074452 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| ||||| ||||| || || ||||| || || || | |||||| Sbjct 3074453 GACTCAACTTCGAGGGTGATTGTCTTGCCGGTAAGAGTTTTGACGAAGATCTGCAT 3074508 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||| ||||||||||| || || || ||||||||||| ||| || ||||| ||||| Sbjct 3073905 CTTATCCTGGATCTTCGCCTTGACATTATCGATGGTGTCGCTGCTCTCCACCTCCAGAGT 3073964 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||||||||||||| || || || || | |||||| Sbjct 3073965 GATCGTCTTTCCCGTGAGGGTTTTGACGAAAATCTGCAT 3074003 >seq7 Length=1170885 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 210951 GTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACT 211010 |||| ||||| |||| |||||| || ||||| || | || || ||||| || || | Sbjct 1015519 GTCCGGCCATCCTCCAACTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCTGGTGGGATA 1015460 Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| || ||||| ||||||||||| ||| || |||||| Sbjct 1015459 CCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCG 1015400 Query 211071 AGAGTGATCGTCTTTCCCGTGAG 211093 || ||||| ||||| ||||| || Sbjct 1015399 AGGGTGATGGTCTTGCCCGTAAG 1015377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151227714980