Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4 131 4e-25 seq1 129 1e-24 seq7 107 5e-18 seq9 89.7 1e-12 >seq4 Length=1296710 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || |||||||| || || || || |||| ||||| |||| | || || || Sbjct 543109 TCTCAACACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCTGCC 543168 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 || || |||||||| || |||||||| || || || ||||| || || ||||| ||||| Sbjct 543169 GTCCTCAAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCTGGAGGGATACCCTCCTT 543228 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||| |||||||| ||| ||| || |||||||| || | || || || | ||||| Sbjct 543229 GTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGACGACTCGACTTCGAGGGTGAT 543288 Query 225678 CGTCTTGCCCGT 225689 |||||||||||| Sbjct 543289 CGTCTTGCCCGT 543300 >seq1 Length=4122216 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || || | ||| || ||| || || |||| ||||| ||| ||| || Sbjct 3073451 ACGGAGACGCAACACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAACGT 3073510 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||||| || |||||||||||||| || ||||| |||||||| ||||| || || ||||| Sbjct 3073511 CCTCCCGTCCTCTAGCTGCTTCCCGGCAAAGATGAGTCGTTGCTGGTCTGGGGGGATACC 3073570 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| ||||| ||||| || | || || || | Sbjct 3073571 CTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTGTCGGACGACTCAACTTCGAG 3073630 Query 225672 CGTGATCGTCTTGCCCGTCAA 225692 ||||| ||||| || ||||| Sbjct 3073631 AGTGATGGTCTTTCCGGTCAA 3073651 Score = 111 bits (122), Expect = 4e-19 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 || ||| || ||||| || || || || || |||| ||||| |||| | |||| ||| Sbjct 3074016 TCGCAGAACGAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGCGTTCGCCC 3074075 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| ||||| || || ||||| || | ||| || ||||| || |||||||| || || Sbjct 3074076 GTCTTCGAGCTGTTTGCCGGCGAAAATCAATCGCTGCTGGTCTGGGGGAATACCCTCTTT 3074135 Query 225618 GTCTTGGATCTTTTGCTTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGA 225676 ||| |||||||| |||| | | | ||||||||||| || || || || | |||| Sbjct 3074136 GTCCTGGATCTTG-GCTTTAACGTTGTCGATGGTGTCGCTGGACTCGACTTCGAGGGTGA 3074194 Query 225677 TCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 | || ||||| || | || || | ||| | |||||| Sbjct 3074195 TGGTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 3074232 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || ||||||||||| |||||||| | || || ||||| || ||||| || ||| Sbjct 3074624 CCGTCCTCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGGTCTGGAGGAATGCCCTCC 3074683 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| |||||||| ||| ||| ||||||||||| || | || || || | ||| Sbjct 3074684 TTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCGACCTCAAGAGTG 3074743 Query 225676 ATCGTCTTGCCCGT 225689 || |||||||| || Sbjct 3074744 ATGGTCTTGCCGGT 3074757 >seq7 Length=1170885 Score = 107 bits (118), Expect = 5e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 225533 CATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTT 225592 || |||| ||| |||||| | ||||| || | |||||| || ||||| || | ||| | Sbjct 1015536 CACTGTAGTCGCTCAAAGTCCGGCCATCCTCCAACTGCTTTCCGGCGAAAATCAATCGCT 1015477 Query 225593 GTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGT 225652 | ||||| || || ||||| |||||||| |||||||| ||| || |||||||||| Sbjct 1015476 GCTGGTCTGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGT 1015417 Query 225653 CTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 | |||| || || || | ||||| ||||||||||| Sbjct 1015416 CCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGT 1015380 >seq9 Length=941136 Score = 89.7 bits (98), Expect = 1e-12 Identities = 173/251 (69%), Gaps = 6/251 (2%) Strand=Plus/Plus Query 193524 GCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCCGCTTGAGCGACGAGAATGTGATGC 193583 ||||| ||||||| |||||||| ||| ||| | ||||| |||| ||| | Sbjct 164961 GCGTCCTTGTAGAGCATGAAGGGACCGCCAGTCTCGGTCTGAGCCTCGAGGATGGCGAAC 165020 Query 193584 CAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTTCCTTCCCTCTCGTACTTTTCGTAC 193643 || || | |||||||| | ||| ||| |||| || || |||||||| |||||| Sbjct 165021 CAGAGCTTCTGAGCTTTGATGGTCTTTCGCCCCTTCCCAGCCTTCTCGTACGACTCGTAC 165080 Query 193644 AGTTCCTCAAAATCTTGTCCG--TAGATTTCGTCGAGACCGGGAGCTTCCTTTGGG-CAA 193700 || |||| || ||| |||| | | ||| |||||||||| || || ||| || Sbjct 165081 AGCGCCTCGAA--CTTCTCCGAGTGAACATCGGCGAGACCGGG-GCACTCTGCGGGACAC 165137 Query 193701 AAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATGAAGAGGTCAGATGTCCAAATG 193760 | ||| |||| || || || || || | ||||||||||||||| || |||| | | Sbjct 165138 ATGAGGGTCCAGTCACCGTCCGACTCGACACGCTTCATGAAGAGGTCGGAGATCCAGAGG 165197 Query 193761 GCGTAGAAAAG 193771 |||||||| || Sbjct 165198 GCGTAGAACAG 165208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530405476088