Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1 152 1e-31 seq4 131 4e-25 seq7 118 2e-21 >seq1 Length=4122216 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | |||| || | ||||| || || |||||||||||||| Sbjct 3073445 ACCACCACGGAGACGCAACACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 3073504 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||| | || |||||||| || |||||||||||||| | ||||| ||||| || Sbjct 3073505 CAACGTCCTCCCGTCCTCTAGCTGCTTCCCGGCAAAGATGAGTCGTTGCTGGTCTGGGGG 3073564 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| || || || | ||||| ||||| || | || || Sbjct 3073565 GATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTGTCGGACGACTCAAC 3073624 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAA 283078 |||||||||||| ||||| || ||||| Sbjct 3073625 TTCGAGAGTGATGGTCTTTCCGGTCAA 3073651 Score = 152 bits (168), Expect = 1e-31 Identities = 149/192 (78%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | |||||| || || || || || ||||| ||||| || Sbjct 3074041 TCCTTCTGGATGTTGTAGTCGGAAAGCGTTCGCCCGTCTTCGAGCTGTTTGCCGGCGAAA 3074100 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| || || ||||| ||||||||||| ||||| |||||||| ||||| ||| | Sbjct 3074101 ATCAATCGCTGCTGGTCTGGGGGAATACCCTCTTTGTCCTGGATCTTGGCTTTAACGTTG 3074160 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| | ||||||||||| ||||| || || || || | ||||| ||| Sbjct 3074161 TCGATGGTGTCGCTGGACTCGACTTCGAGGGTGATGGTTTTGCCGGTGAGGGTCTTCACG 3074220 Query 283089 AATATCTGCATT 283100 || ||||||||| Sbjct 3074221 AAGATCTGCATT 3074232 Score = 138 bits (152), Expect = 2e-27 Identities = 123/154 (80%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 ||||||||| ||| ||||| || ||||| || || |||||||| ||||||||||| || | Sbjct 3074604 TGTAGTCAGAAAGGGTGCGACCGTCCTCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCT 3074663 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 |||| ||||| ||||||||||| |||||||| || || || | ||||| ||||| | Sbjct 3074664 GGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGG 3074723 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 ||| ||||| || |||||||| ||||| || || Sbjct 3074724 AAGACTCGACCTCAAGAGTGATGGTCTTGCCGGT 3074757 Score = 132 bits (146), Expect = 1e-25 Identities = 136/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 ||||||| | ||| |||||||||||||| | ||| || || || || ||||| || || | Sbjct 3074331 TGTAGTCGGAAAGAGTGCGGCCATCCTCCAATTGCTTACCAGCGAAAATCAATCGCTGCT 3074390 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 |||| || |||||||||||||| || ||||| || || || | || || ||||| | Sbjct 3074391 GGTCTGGTGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCGG 3074450 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | | || |||||||| ||||| ||||| || || | ||| || ||||| |||||||| Sbjct 3074451 ACGACTCAACTTCGAGGGTGATTGTCTTGCCGGTAAGAGTTTTGACGAAGATCTGCAT 3074508 Score = 114 bits (126), Expect = 3e-20 Identities = 127/167 (76%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 282922 TGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGT 282980 |||| |||| |||| || ||||| ||||| | || || ||||| |||||||| || || Sbjct 3074925 TGTAATCAGACAAG-GTTCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATCAATCGCTGC 3074983 Query 282981 TGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCC 283040 ||||| || |||||||||||||| |||||||| || || ||| | || || |||||| Sbjct 3074984 TGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCC 3075043 Query 283041 GAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || | ||||| ||||| || || ||||| || || | ||||| || Sbjct 3075044 GAGGACTCGACCTCGAGGGTAATGGTCTTGCCGGTAAGGGTCTTGAC 3075090 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| ||||| |||| || || ||| || || ||||| |||||||| | Sbjct 3073726 ACCACCACGCAGACGAAGCACCAAGTGCAAAGTGGACTCCTTCTGGATATTGTAGTCGGA 3073785 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||| ||||| | ||||| ||||| || || | ||| || ||||| || Sbjct 3073786 AAGGGTTCGGCCGTCCTCCAACTGTTTGCCGGCGAAAATGAGACGCTGCTGGTCTGGGGG 3073845 Query 282992 AATACCCTCC 283001 ||| |||||| Sbjct 3073846 AATGCCCTCC 3073855 >seq4 Length=1296710 Score = 131 bits (144), Expect = 4e-25 Identities = 129/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | ||| || | ||| ||||| || || || ||||| ||| Sbjct 543134 TCCTTCTGGATGTTGTAGTCGGAAAGGGTCCTGCCGTCCTCAAGCTGCTTGCCGGCGAAG 543193 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | || || ||||| || |||||||||||||| |||||||| || || || | Sbjct 543194 ATGAGCCGCTGCTGGTCTGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTG 543253 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 || || ||||| || | ||||||||||| ||||||||||| ||||| Sbjct 543254 TCAATGGTGTCGGACGACTCGACTTCGAGGGTGATCGTCTTGCCCGT 543300 >seq7 Length=1170885 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282936 GTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATA 282995 || ||||||||||| | || || ||||| || ||||| || || ||||| || ||| Sbjct 1015519 GTCCGGCCATCCTCCAACTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCTGGTGGGATA 1015460 Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| |||||||| || || ||| | ||||| |||||||| | ||||| ||| Sbjct 1015459 CCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCG 1015400 Query 283056 AGAGTGATCGTCTTACCCGT 283075 || ||||| ||||| ||||| Sbjct 1015399 AGGGTGATGGTCTTGCCCGT 1015380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738502610008