Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1 141 7e-29 seq4 127 1e-24 >seq1 Length=4122216 Score = 141 bits (156), Expect = 7e-29 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || |||| || || || |||||||| || |||||| ||||||||||| || Sbjct 3074001 CATACCTCCCCTCAATCGCAGAACGAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTC 3074060 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| |||| || ||||| || ||||| || ||||| |||||||| |||| Sbjct 3074061 GGAAAGCGTTCGCCCGTCTTCGAGCTGTTTGCCGGCGAAAATCAATCGCTGCTGGTCTGG 3074120 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATT 44285 || | ||| || || ||| ||||| |||| || ||| | ||||||||| ||| | Sbjct 3074121 GGGAATACCCTCTTTGTCCTGGATCTT-GGCTTTAACGTTGTCGATGGTGTCGCTGGACT 3074179 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || | || || || || || |||||||||||||||||||| ||||| Sbjct 3074180 CGACTTCGAGGGTGATGGTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 3074231 Score = 109 bits (120), Expect = 4e-19 Identities = 140/191 (73%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 |||||||| ||| || ||||||||||| ||||||||||| ||| | | | |||| Sbjct 3073460 CAACACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAACGTCCTCCCGTC 3073519 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 || |||||||||||||||||||| | || ||||| |||| || | ||| ||||| || Sbjct 3073520 CTCTAGCTGCTTCCCGGCAAAGATGAGTCGTTGCTGGTCTGGGGGGATACCCTCCTTGTC 3073579 Query 44245 CGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302 | |||||| ||| || ||| | || ||||||| || || || || | || || Sbjct 3073580 CTGGATCTTCGCCTTGACATTGT--CGATCGTGTCGGACGACTCAACTTCGAGAGTGATG 3073637 Query 44303 GTCTTTCCCGT 44313 |||||||| || Sbjct 3073638 GTCTTTCCGGT 3073648 Score = 93.3 bits (102), Expect = 3e-14 Identities = 105/139 (76%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 44181 CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCT 44240 |||| || |||||||||||||| ||||||||||||||||| |||| ||| | || |||| Sbjct 3074625 CGTCCTCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGGTCTGGAGGAATGCCCTCCT 3074684 Query 44241 TTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGT 44298 | ||| ||||| ||| || ||| | |||||||||| || || ||||| | || Sbjct 3074685 TGTCCTGGATCTTGGCCTTGACATTGT--CGATGGTGTCGGAAGACTCGACCTCAAGAGT 3074742 Query 44299 AATCGTCTTTCCCGTGAGG 44317 || ||||| || || ||| Sbjct 3074743 GATGGTCTTGCCGGTAAGG 3074761 >seq4 Length=1296710 Score = 127 bits (140), Expect = 1e-24 Identities = 157/211 (74%), Gaps = 8/211 (4%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || |||| ||||||||||||||| || || |||||| ||||||||||| |||| Sbjct 543098 CCACCCCTCAATCTCAACACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAA 543157 Query 44171 AGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 || || || |||| || |||||||| ||||| ||||| | |||||||| |||| || Sbjct 543158 AG--GGTCCTGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCTGGAG 543215 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTC 44286 | | ||| ||||| ||| ||||| ||| || ||| | |||||||||| || || Sbjct 543216 GGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGT--CAATGGTGTCGGACGACTC 543273 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 || || | || |||||||| ||||| ||| Sbjct 543274 GACTTCGAGGGTGATCGTCTTGCCCGTAAGG 543304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990171856084