Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1 163 7e-35 seq4 145 2e-29 seq7 120 7e-22 >seq1 Length=4122216 Score = 163 bits (180), Expect = 7e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || ||||| ||||||||||| || || | ||| Sbjct 3074228 CAGATCTTCGTGAAGACCCTCACCGGCAAAACCATCACCCTCGAAGTCGAGTCCAGCGAC 3074169 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| ||| ||||| ||||||||||| || || || || |||||||| Sbjct 3074168 ACCATCGACAACGTTAAAGCCAAGATCCAGGACAAAGAGGGTATTCCCCCAGACCAGCAG 3074109 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || |||||||| |||||||||||||| || | || ||| |||| || ||| || Sbjct 3074108 CGATTGATTTTCGCCGGCAAACAGCTCGAAGACGGGCGAACGCTTTCCGACTACAACATC 3074049 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 || || || || ||||| || || ||| || || Sbjct 3074048 CAGAAGGAGTCTACACTTCACCTCGTTCTGCGA 3074016 Score = 118 bits (130), Expect = 3e-21 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| |||||||| || || || || ||||||||||| || || || ||| Sbjct 3074505 CAGATCTTCGTCAAAACTCTTACCGGCAAGACAATCACCCTCGAAGTTGAGTCGTCCGAC 3074446 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| |||||||||||||| || || ||||| || |||||||| Sbjct 3074445 ACCATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCACCAGACCAGCAG 3074386 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 ||| | || ||||| || || || | || ||||| | |||||| |||| || Sbjct 3074385 CGATTGATTTTCGCTGGTAAGCAATTGGAGGATGGCCGCACTCTTTCCGACTA 3074333 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || ||||| || ||||| ||||| || || || ||||| ||||| || ||||| Sbjct 3073648 ACCGGAAAGACCATCACTCTCGAAGTTGAGTCGTCCGACACGATCGACAATGTCAAGGCG 3073589 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || ||||| || |||||||||||||| ||||| ||||| || Sbjct 3073588 AAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAGCAACGACTCATCTTTGCCGGGAAG 3073529 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| || || || ||||| | ||| || ||| |||| || || || ||||| Sbjct 3073528 CAGCTAGAGGACGGGAGGACGTTGAGCGACTACAACATCCAGAAGGAGAGCACCCTGCAC 3073469 Query 178125 CTTGTTTTGAGACTC 178139 | || ||| | ||| Sbjct 3073468 TTGGTGTTGCGTCTC 3073454 Score = 105 bits (116), Expect = 2e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 || || || || || || || || || ||||||||||| || ||| |||||||| || Sbjct 3075090 GTCAAGACCCTTACCGGCAAGACCATTACCCTCGAGGTCGAGTCCTCGGACACCATTGAC 3075031 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 |||||||| ||||| |||||||| || || ||||| || |||||||| ||| | ||| Sbjct 3075030 AACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAGCAGCGATTGATC 3074971 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGG 178078 |||||||| || ||| | || || || Sbjct 3074970 TTCGCCGGCAAGCAGTTGGAGGACGG 3074945 Score = 98.7 bits (108), Expect = 2e-15 Identities = 122/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || || || || || ||||| || ||||| || || ||||||||||| || ||||| Sbjct 3074760 CTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCCGACACCATCGACAATGTCAAG 3074701 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| |||||||| || || || ||||| |||||||| || | ||||||||||| Sbjct 3074700 GCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAGCAGCGTTTGATCTTCGCCGGG 3074641 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATA--ACGTCCA 178105 || ||||| || || || | || ||| | || || | ||||||| Sbjct 3074640 AAGCAGCTTGAGGACGGTCGCACCCTTTCTGACTACAGTACGTCCA 3074595 Score = 86.0 bits (94), Expect = 2e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| ||||| ||||| |||||||| || |||||||| ||| ||| Sbjct 3074000 CAGATTTTCGTCAAAACCCTCACGGGAAAGACGATCACTCTGGAGGTGGAGAGCAGCGAC 3073941 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAA 178018 |||||||| || ||||| ||||| ||||| || Sbjct 3073940 ACCATCGATAATGTCAAGGCGAAGATCCAGGATAA 3073906 >seq4 Length=1296710 Score = 145 bits (160), Expect = 2e-29 Identities = 149/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || || || || |||||||||||||| || || || |||||||| || || ||||| Sbjct 543303 CTTACGGGCAAGACGATCACCCTCGAAGTCGAGTCGTCCGACACCATTGACAATGTCAAG 543244 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| |||||||| || || |||||||| |||||||| || || ||||||||||| Sbjct 543243 GCCAAGATCCAGGACAAGGAGGGTATCCCTCCAGACCAGCAGCGGCTCATCTTCGCCGGC 543184 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121 || ||||| || || || ||||| ||| |||| || ||| |||| || || || || || Sbjct 543183 AAGCAGCTTGAGGACGGCAGGACCCTTTCCGACTACAACATCCAGAAGGAGTCTACCCTC 543124 Query 178122 CATCTTGTTTTGAGA 178136 || || || |||||| Sbjct 543123 CACCTGGTGTTGAGA 543109 >seq7 Length=1170885 Score = 120 bits (132), Expect = 7e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || || || || || |||||||||||||| || ||| ||||||||||| |||||||| Sbjct 1015377 CTTACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATCGACAACGTCAAG 1015436 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| |||||||| || || ||||| || |||||||| ||| | || ||||||||| Sbjct 1015437 GCCAAGATCCAGGACAAGGAGGGTATCCCACCAGACCAGCAGCGATTGATTTTCGCCGGA 1015496 Query 178062 AAACAGCTCGAAGATGGAAGGACT 178085 || ||| | || ||||| ||||| Sbjct 1015497 AAGCAGTTGGAGGATGGCCGGACT 1015520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730398014088