Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20aurantiaca_20[genbank_20GCA_5F001600655.1_202016-03-01] 52 sequences; 19,344,119 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1 143 2e-29 seq4 105 6e-18 >seq1 Length=4122216 Score = 143 bits (158), Expect = 2e-29 Identities = 149/193 (77%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| |||||||| || || ||| |||| |||||||| ||||||||||| Sbjct 3074040 CTCCTTCTGGATGTTGTAGTCGGAAAGCGTTCGCCCGTCTTCGAGCTGTTTGCCGGCGAA 3074099 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 |||| ||||| ||||| | ||||| | ||| |||||| || | || |||| |||| Sbjct 3074100 AATCAATCGCTGCTGGTCTGGGGGAATACCCTCTTTGTCC-TGGATCTTGGCTTTAACGT 3074158 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | |||||||| ||||| || || | || || ||||| || || || ||||| | Sbjct 3074159 TGTCGATGGTGTCGCTGGACTCGACTTCGAGGGTGATGGTTTTGCCGGTGAGGGTCTTCA 3074218 Query 41850 CGAAAATCTGCAT 41862 |||| |||||||| Sbjct 3074219 CGAAGATCTGCAT 3074231 Score = 102 bits (112), Expect = 8e-17 Identities = 148/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||||| ||||| |||||||||||||| ||||| |||||| Sbjct 3073446 CCACCACGGAGACGCAACACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 3073505 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || | | |||| || |||||||| ||||| || || || || || ||||| | ||| Sbjct 3073506 AACGTCCTCCCGTCCTCTAGCTGCTTCCCGGCAAAGATGAGTCGTTGCTGGTCTGGGGGG 3073565 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | | |||||||||| ||| || ||| || | || | |||||| |||||| | Sbjct 3073566 ATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCG--ATCGTGTCGGACGACTCAA 3073623 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCA 41840 | || | || || || || || |||| Sbjct 3073624 CTTCGAGAGTGATGGTCTTTCCGGTCA 3073650 Score = 98.7 bits (108), Expect = 9e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| |||| ||| ||||||||| || || |||||||| Sbjct 3073727 CCACCACGCAGACGAAGCACCAAGTGCAAAGTGGACTCCTTCTGGATATTGTAGTCGGAA 3073786 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || | ||| ||||||||||| || || ||||| ||||| | |||| Sbjct 3073787 AGGGTTCGGCCGTCCTCCAACTGTTTGCCGGCGAAAATGAGACGCTGCTGGTCTGGGGGA 3073846 Query 41756 ACGCTCTCC 41764 | || |||| Sbjct 3073847 ATGCCCTCC 3073855 >seq4 Length=1296710 Score = 105 bits (116), Expect = 6e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 |||||||| || || || ||||||||| ||||| |||||||| ||||| | |||| Sbjct 543113 AACACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCTGCCGTCC 543172 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || ||||||||||||||||| || || ||||| ||||| | || | | |||||||||| Sbjct 543173 TCAAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCTGGAGGGATACCCTCCTTGTCC 543232 Query 41771 ATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 || | || || | || | | | |||||| |||||| || || | || ||||| Sbjct 543233 -TGGATCTTGGCCTTGACATTGTCAATGGTGTCGGACGACTCGACTTCGAGGGTGATCGT 543291 Query 41830 TTTACCCGTCAG 41841 || ||||| || Sbjct 543292 CTTGCCCGTAAG 543303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303699502400