Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq5 122 9e-23 seq2 89.7 5e-13 >seq5 Length=1923346 Score = 122 bits (134), Expect = 9e-23 Identities = 102/125 (82%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 16984 TCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTT 17043 |||||| |||| ||||||||| ||||| || |||||||| ||||||||| || ||||| Sbjct 661445 TCCCTCATCTCGGCTGATAAGCTCGTTCGAGAATGTCAATCCGGGCATCAGACCACGTTT 661504 Query 17044 CTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAA 17103 ||||||||| || || |||||||| || || |||||||| || || ||||| | ||||| Sbjct 661505 CTTTAACCAGAAGATGGCGGCGAAAGATCCCGAAAAGAAGATGCCTTCGACACACGCAAA 661564 Query 17104 CGCGA 17108 |||| Sbjct 661565 AGCGA 661569 >seq2 Length=3428829 Score = 89.7 bits (98), Expect = 5e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 16999 GATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATAT 17058 ||| || ||||| || || || | |||||||| || || ||||| | ||| || || Sbjct 11581 GATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGAT 11522 Query 17059 CGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTC 17118 | |||||| || || || ||||| ||||||||||||| ||||| ||||| | || || Sbjct 11521 GGAGGCGAATGAACCCGAGAAGAAGATACCCTCGACGGCGGCAAAGGCGATGAGACGCTC 11462 Query 17119 GGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTAT 17178 ||| | || | | | || ||||| || || |||| |||||||| | ||| || Sbjct 11461 AGCGAATGTGGACTTGTCGTCCGTGATCCACTTGAGCGCCCAGTCGGCTTTCTTCTTGAT 11402 Query 17179 GCAATCCATCGTTTCTATGGCCTTAAA 17205 ||| || || || ||||| | ||| Sbjct 11401 GCAGGGGATGGTCTCAATGGCGTCAAA 11375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545431797680