Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq4 87.8 2e-12 seq1 84.2 2e-11 >seq4 Length=1954963 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | | ||||| || | || |||||||| || ||||| ||||| | | Sbjct 837948 CCACCACGCAGACGCAACACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAC 837889 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | ||||||||||||| ||||| || |||| || | ||||||||| ||| Sbjct 837888 AGGGTCCGACCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCTGGGGGA 837829 Query 21069 ACGCCTTCCTTGTCGGCGATCTT 21091 | || |||||||| |||||| Sbjct 837828 ATACCCTCCTTGTCCTGGATCTT 837806 >seq1 Length=3588805 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| || |||||||| || || || ||||| | ||| || || | || || |||||| Sbjct 3579800 TGCAGTGTTGACTCCTTCTGGATATTGTAGTCGGACAGCGTGCGGCCATCTTCGAGCTGT 3579859 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 ||||| ||| | || | || ||| ||||| ||| | || |||||||| |||||| Sbjct 3579860 TTGCCGGCAAAGATCAATCGCTGTTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTC 3579919 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 || || | | ||| || || | | ||| || | || ||||| ||||| || Sbjct 3579920 GCCTTTACATTGTCGATGGTGTCGCTCGACTCAACCTCAAGAGTGATGGTTTTGCCAGTG 3579979 Query 21153 AACGTTTTGACAAATATTTGCATT 21176 | ||||||||||| || |||||| Sbjct 3579980 AGGGTTTTGACAAAGATCTGCATT 3580003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422259066196616