Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2 172 6e-38 seq1 145 8e-30 seq4 134 1e-26 seq5 96.9 4e-15 >seq2 Length=3428829 Score = 172 bits (190), Expect = 6e-38 Identities = 181/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 116952 ACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCG 117011 ||||||| ||||| || || ||| |||| |||| ||||| |||||||| |||||| Sbjct 11379 ACGCCATTGAGACCATCCCCTGCATCAAGAAGAAAGCCGACTGGGCGCTCAAGTGGATCA 11438 Query 117012 CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCT 117071 | | | || || | |||| ||||| || | ||||| || ||||||||||| ||| Sbjct 11439 CGGACGACAAGTCCACATTCGCTGAGCGTCTCATCGCCTTTGCCGCCGTCGAGGGTATCT 11498 Query 117072 TCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCC 117131 |||| ||||| |||||| |||| || ||||||||||| || || ||||||||||| | Sbjct 11499 TCTTCTCGGGTTCATTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGAC 11558 Query 117132 TGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTG 117189 | || ||| ||||||||||||||| | || |||||||| || |||||||||||| Sbjct 11559 TCACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTCCACACCGACTTTGCCTG 11616 Score = 86.0 bits (94), Expect = 6e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 116780 GACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAG 116839 ||||| |||||||||||||| || |||||||||||| || |||||||||| ||||| Sbjct 11162 GACGGTATCGTCAACGAGAACCTAGTCGAGCGTTTCTCTGCCGAGGTGCAGGCACCCGAG 11221 Query 116840 GCGCGGTGCTTCTACGGCTTTCAGATC 116866 || |||||||||||| || || ||| Sbjct 11222 GCCAAGTGCTTCTACGGTTTCCAAATC 11248 >seq1 Length=3588805 Score = 145 bits (160), Expect = 8e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || ||||| ||||| |||||||||||||| | || || || | | Sbjct 3580003 AATGCAGATCTTTGTCAAAACCCTCACTGGCAAAACCATCACTCTTGAGGTTGAGTCGAG 3579944 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | | | | |||| || || | ||||| ||||| |||||| | ||||| Sbjct 3579943 CGACACCATCGACAATGTAAAGGCGAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCA 3579884 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || ||| | |||| || ||||||||||| || || | ||||| || ||||||||| Sbjct 3579883 ACAGCGATTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGCTGTCCGACTACAA 3579824 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| | || ||||| || || ||||| |||||||| || Sbjct 3579823 TATCCAGAAGGAGTCAACACTGCACCTCGTCTTGCGATTGAGGGGTGG 3579776 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 40789 GAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAG 40848 ||||| || ||| | |||||||| || || |||| || || || |||||||| |||| | Sbjct 3579627 GAGGGTATTCCCCCAGACCAGCAGCGTCTTATCTTTGCCGGAAAGCAGCTGGAGGACGGG 3579568 Query 40849 CGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 | || | | |||||||||||||||||||||| ||| ||||| | |||||||| Sbjct 3579567 AGGACGTTGAGCGACTACAACATCCAGAAGGAGAGCACCCTGCACTTGGTGTTGCG 3579512 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/167 (73%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 40702 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC-GTGCA 40760 || || || ||||| ||||||||||||||| |||| || || || | |||| | || Sbjct 3580861 GTCAAGACCCTCACCGGCAAAACCATCACCCTCGAGGTTGAGTCCTCGGACACCATTGAC 3580802 Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| |||||| || || | ||||| ||||| || ||| | |||||||| ||| | || Sbjct 3580801 AACG-TCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGATTGAT 3580743 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||| ||||| ||| |||| |||| || ||| | ||||||| Sbjct 3580742 TTTCGCCGGCAAGCAGTTGGAGGACGGCCGAACCTTGTCTGACTACA 3580696 >seq4 Length=1954963 Score = 134 bits (148), Expect = 1e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAG 40770 || |||||||| || |||||| |||| |||||| | |||||| | | | | ||||| Sbjct 837743 CTTACGGGCAAGACGATCACCCTCGAAGTCGAATCGTCCGACACCATCGACAATGTCAAG 837802 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 | || || | ||||| ||||| || ||| | |||||||| || || || | ||| ||| Sbjct 837803 GCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGTCTGATTTTCGCCGGC 837862 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || |||||||| |||| || ||||| ||||||||||||||||||||| | ||||| Sbjct 837863 AAGCAGCTGGAGGACGGTCGGACCCTGTCTGACTACAACATCCAGAAGGAGTCTACGCTC 837922 Query 40891 CATCTAGTGTTGCG 40904 || | |||||||| Sbjct 837923 CACTTGGTGTTGCG 837936 >seq5 Length=1923346 Score = 96.9 bits (106), Expect = 4e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 117038 CGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATA 117097 ||||| || || || ||| ||||| ||| ||||||||||||| |||||||||||| Sbjct 661576 CGCCTTGTCGCTTTTGCGTGTGTCGAAGGCATCTTCTTTTCGGGATCTTTCGCCGCCATC 661517 Query 117098 TTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCC 117157 || ||| | |||||||| || || |||||||| |||| ||| |||||||| ||| | Sbjct 661516 TTCTGGTTAAAGAAACGTGGTCTGATGCCCGGATTGACATTCTCGAACGAGCTTATCAGC 661457 Query 117158 AGGGACGAGGG 117168 | || ||||| Sbjct 661456 CGAGATGAGGG 661446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219032553760