Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 seq4 98.7 9e-16 >seq1 Length=3588805 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || | |||| ||| || | ||| | ||| ||||| || || || ||||| ||| Sbjct 3579774 TACCACCCCTCAATCGCAAGACGAGGTGCAGTGTTGACTCCTTCTGGATATTGTAGTCGG 3579833 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||||| ||| ||||||||||| || || |||| | ||||| || || || | Sbjct 3579834 ACAGCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAATCGCTGTTGGTCTGGGG 3579893 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||||||||| || || || || | |||| |||||| | ||| | Sbjct 3579894 GGATACCCTCCTTGTCCTGGATCTTCGCCTTTACATTGTCGATGGTGTCGCTCGACTCAA 3579953 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | |||||||| || || ||||| ||||| |||||||| Sbjct 3579954 CCTCAAGAGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 3580002 Score = 91.5 bits (100), Expect = 1e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 118561 TGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCT 118620 |||| ||| | ||||||| ||| || ||||| || ||||| |||| | ||||||| Sbjct 3580098 TGTAGTCGGAAAGAGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAATCGCTGCT 3580157 Query 118621 GATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG 118680 | || || || || ||||||||||| ||| || || || | |||| |||||| | Sbjct 3580158 GGTCTGGCGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCGG 3580217 Query 118681 TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| | ||| | ||| |||||||| || || || || || |||||||| Sbjct 3580218 ACGACTCAACCTCAAGGGTGATCGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 3580275 Score = 82.4 bits (90), Expect = 7e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||||||||| | || ||| || || |||||||| ||||||| || | | || Sbjct 3579514 CAACACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAACGTCCTCCCGTC 3579573 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 ||| ||||| ||||| || |||| ||||||||||| || || || || |||||| || Sbjct 3579574 CTCCAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGAATACCCTCCCTG 3579631 >seq4 Length=1954963 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||||||||||| |||||||| || || |||||||| || || || || || Sbjct 837934 CAACACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTCCGACCGTC 837875 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || || ||| | || ||||||||||| || || || || ||||||||||| Sbjct 837874 CTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTC 837815 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| |||||| | ||||| |||| ||| | ||| Sbjct 837814 CTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGACGATTCGACTTCGAGGGTGATCGT 837755 Query 118706 TTTGCCGGTCAG 118717 ||||| || || Sbjct 837754 CTTGCCCGTAAG 837743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830262529992