Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq4 113 5e-20 seq1 109 6e-19 >seq4 Length=1954963 Score = 113 bits (124), Expect = 5e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||||||||| || | || |||||| || || ||||| |||| ||| ||||| | Sbjct 837937 ACGCAACACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTCCGACC 837878 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || ||||| || || ||||||||||| | || | | |||||| Sbjct 837877 GTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCTGGGGGAATACCCTCCTT 837818 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || |||| | | | |||||| |||||| || |||| ||||| Sbjct 837817 GTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGACGATTCGACTTCGAGGGTGAT 837758 Query 43148 GGTTTTGCCCGTTAG 43162 || |||||||| || Sbjct 837757 CGTCTTGCCCGTAAG 837743 >seq1 Length=3588805 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || || ||||| || | |||| ||| |||||| || |||||||| || | | Sbjct 3579776 CCACCCCTCAATCGCAAGACGAGGTGCAGTGTTGACTCCTTCTGGATATTGTAGTCGGAC 3579835 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || ||||| || || || || || | |||||| ||||| | || Sbjct 3579836 AGCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAATCGCTGTTGGTCTGGGGGG 3579895 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | |||||||||| ||| || || | | | | ||||||||||| || || Sbjct 3579896 ATACCCTCCTTGTCCTGGATCTTCGCCTTTACATTGTCGATGGTGTCGCTCGACTCAACC 3579955 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | |||||||||||||| || || || || |||||||| |||||| Sbjct 3579956 TCAAGAGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCATT 3580003 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/179 (73%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 43006 TGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCT 43065 |||| || | ||||| ||| | || || |||||||||||||| || || | |||||||| Sbjct 3580098 TGTAGTCGGAAAGAGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAATCGCTGCT 3580157 Query 43066 GGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCG 43124 |||| | ||| | | |||||||||| ||| | || | |||| | | | |||||| Sbjct 3580158 GGTCTGGCGGGATACCCTCCTTGTCC-TGAATCTTCGCCTTGACATTGTCGATGGTGTCG 3580216 Query 43125 CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || || | ||||| || ||||| || || ||||| || ||||| ||||| Sbjct 3580217 GACGACTCAACCTCAAGGGTGATCGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 3580275 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 42946 TGTCCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATAT 43005 || |||| || || || | | |||||||||||| |||| ||||||||||| || || | Sbjct 3579489 TGCCCTACTGACCACCACGAAGACGCAACACCAAGTGCAGGGTGCTCTCCTTCTGGATGT 3579548 Query 43006 TGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCT 43065 |||| || || |||| | |||| || |||||||| || || || || || ||||||| Sbjct 3579549 TGTAGTCGCTCAACGTCCTCCCGTCCTCCAGCTGCTTTCCGGCAAAGATAAGACGCTGCT 3579608 Query 43066 GGTC 43069 |||| Sbjct 3579609 GGTC 3579612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817414159280