Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1 120 2e-22 seq4 114 8e-21 >seq1 Length=3588805 Score = 120 bits (132), Expect = 2e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| || ||||||||||||||| ||| | || || | ||| ||||| || || Sbjct 3579812 TCCTTCTGGATATTGTAGTCGGACAGCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAG 3579871 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | ||||| ||||| ||| | | ||||||||| ||||| ||||| || | Sbjct 3579872 ATCAATCGCTGTTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTTACATTG 3579931 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| |||| || || || | |||||||||||||| ||||| ||||| ||| Sbjct 3579932 TCGATGGTGTCGCTCGACTCAACCTCAAGAGTGATGGTTTTGCCAGTGAGGGTTTTGACA 3579991 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 3579992 AAGATCTGCAT 3580002 Score = 87.8 bits (96), Expect = 1e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 34212 TGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCT 34271 ||||||| |||| ||| |||| |||||||||||||| |||||||| | ||||||| Sbjct 3580696 TGTAGTCAGACAAGGTTCGGCCGTCCTCCAACTGCTTGCCGGCGAAAATCAATCGCTGCT 3580755 Query 34272 GGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGG 34331 |||| ||| | | ||||||||| ||||| ||| | | | | || | || | Sbjct 3580756 GGTCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCG 3580815 Query 34332 TCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 || || || || | |||||||||||||||||||| || || || Sbjct 3580816 AGGACTCAACCTCGAGGGTGATGGTTTTGCCGGTGAGGGTCTTGAC 3580861 Score = 82.4 bits (90), Expect = 5e-11 Identities = 127/179 (71%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 34212 TGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCT 34271 |||||||||| || || | || |||| |||||| || || || || | ||||||| Sbjct 3580098 TGTAGTCGGAAAGAGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAATCGCTGCT 3580157 Query 34272 GGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCG 34330 |||| | |||| | | ||||||||| ||||| ||| | || | | || | ||| Sbjct 3580158 GGTCTGGCGGG-ATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCG 3580216 Query 34331 GTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | ||| || || || | ||||| || |||||||| || || || || ||||||||||| Sbjct 3580217 GACGACTCAACCTCAAGGGTGATCGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 3580275 >seq4 Length=1954963 Score = 114 bits (126), Expect = 8e-21 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || ||||| ||| | ||| || ||||| ||||||||||| ||| Sbjct 837948 CCACCACGCAGACGCAACACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAC 837889 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| |||| ||||||||| |||||||| || ||||||||||| ||| Sbjct 837888 AGGGTCCGACCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCTGGGGGA 837829 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | | || | |||| ||||||||| Sbjct 837828 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGACGATTCGACT 837769 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAG 34368 || | ||||| || ||||| || || Sbjct 837768 TCGAGGGTGATCGTCTTGCCCGTAAG 837743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071897626560