Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2 230 5e-55 >seq2 Length=3428829 Score = 230 bits (254), Expect = 5e-55 Identities = 660/1006 (66%), Gaps = 22/1006 (2%) Strand=Plus/Minus Query 248734 ATGGTCGCCGATGACGTCCACACCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCG 248793 ||| | ||||| |||||| ||| |||| ||||||| | || |||| ||| || Sbjct 3423266 ATGATTGCCGACGACGTCTACAAGATCATCATGGACAACAAGGACGTCCTCGACTCTGCC 3423207 Query 248794 ATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCG 248853 || |||| | || || | ||| | | ||||| ||||| || || ||| ||| Sbjct 3423206 ATCATCTACAACCGGGACTTTGCCTACAACTACTTTGGGTTCAAGACCCTCGAGCGATCC 3423147 Query 248854 TATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTG 248913 || ||||| | | || || ||||| || || ||||||||| | ||||| || Sbjct 3423146 TACCTCCTTCGCGTCAACGGTAAAATCGTCGAGCGTCCCCAGCACATGATTATGCGTGTC 3423087 Query 248914 GCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGT 248973 |||||||| || ||| | |||| || | || | ||||| |||| | ||| | Sbjct 3423086 GCTGTCGGTATCCACGGTGCCAACATTGACAAGGTCATTGAGACCTACAACCTCATGTCT 3423027 Query 248974 GAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAG 249033 || || | | || || || | || || |||||||||||||||||| |||| || Sbjct 3423026 GAGCGATACTTCACCCACGCTTCCCCTACCCTCTTCAACGCCGGTACCCCCAACCCCCAA 3422967 Query 249034 CTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACG 249093 || || ||||| || | || ||| | |||||||| | || || || ||||| || Sbjct 3422966 ATGTCATCCTGCTTCCTCGTGGCGATGAAGGACGACTCGATTGAGGGTATCTATGAGACC 3422907 Query 249094 CTTAAACAGACG---GCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCC 249150 || || |||| ||| |||| || || || ||||| ||||| ||| | || | Sbjct 3422906 CTCAA---GACGTGCGCGCAGATCTCCAAGACTGCAGGCGGGATCGGACTCCACATCCAC 3422850 Query 249151 AACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTA 249210 || |||| || ||||| || ||||| ||||| || ||| | | ||||||||| Sbjct 3422849 AATGTCCGCGCCAAGGGATCTTACATTGCCGGTACCAACGGGTACTCGAACGGTATCGTA 3422790 Query 249211 CCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGA 249267 ||| | || ||| || || |||| || | | | || |||||| ||| | || Sbjct 3422789 CCCATGCTCCGAGCGTTCGACGCCACGGCGCGATACGTCGACCAGGGCGGTAACAAACGT 3422730 Query 249268 AAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGAC 249327 ||| |||| ||||| || | || ||||||||||| || || |||||||| ||| Sbjct 3422729 CCGGGCGCGTTTGCCATCTACCTCGAGCCCTGGCACGCCGACATCTTCGAGTTCCTCGAC 3422670 Query 249328 TTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGG 249387 || |||||| |||| || ||| | | || |||||||||||||||| ||| ||| Sbjct 3422669 CTGCGCAAGAACCACGGTAAGGAGGAGGTCCGTGCACGTGACCTCTTCTACGCCCTCTGG 3422610 Query 249388 GTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCG 249447 |||| ||| | |||||| || ||| || | |||||||| ||||| || | | || Sbjct 3422609 ATCTCGGACCTCTTCATGAAGCGGGTCGAGTCGGACGGCGAGTGGACACTCATGTGCCCT 3422550 Query 249448 TCCGA-CGCCCCGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGCCTATAAGAA 249506 |||| ||||||| || |||| | ||| | | ||||| || ||| || Sbjct 3422549 GCCGAGTGCCCCGG-TCTTGCCGATGTCCACTCGGAGAAGTTCGAGCAGCTCTACGAGTC 3422491 Query 249507 ATACGAATCCAACGGCATCG---GCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAA 249560 ||||| |||| | | ||||| || ||||| | || || ||||| | Sbjct 3422490 GTACGAGAAGGCTGGCAAGGGTCGAAAGACCATTAAGGCCCAGAAGCTCTGGTTTGCCA- 3422432 Query 249561 GGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCA 249619 | | ||| | || | ||||| || || || | | || | | ||| |||||| | Sbjct 3422431 --TTCTTGAGGCTCAAACCGAGACGGGTGGTCCCT-TCATGCTCTACAAGGACGCGGCGA 3422375 Query 249620 ACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGG 249679 |||||||| ||||||| ||| || ||||| ||| || || ||||||||| | ||| Sbjct 3422374 ACGCCAAGTCGAACCAACAGCACCTCGGTACGATCAAATCCTCCAATCTCTGTACCGAGA 3422315 Query 249680 TGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 | || | ||||| || || ||| |||| || |||||||| || Sbjct 3422314 TTATCGAGTACTCTGCCCCCGACGAGGTTGCTGTTTGCAACCTTGC 3422269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766042301568