Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2 264 1e-65 seq1 104 2e-17 seq4 96.9 3e-15 >seq2 Length=3428829 Score = 264 bits (292), Expect = 1e-65 Identities = 937/1442 (65%), Gaps = 36/1442 (2%) Strand=Plus/Plus Query 22457 ACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCG 22516 || || || || ||||| || | || ||||| ||| | |||||||| | || ||| Sbjct 3421696 ACGACCTGGAAATCGCCAGAAAGCACTCGGCGAGCGTAGAGCATGGATGTGTAGGGCTCG 3421755 Query 22517 AAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGT 22576 || | || || || || ||||| | || || ||||| ||||| || || | || Sbjct 3421756 AAGCACTCGTTCCAGCCGAGAATCTGGGAAGTGGAGGCGGTAGGCATAGGGGCAACGAGG 3421815 Query 22577 AGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTA-CTCTTGAGCATCGACCAGTCCCACAG 22635 || ||||||| | ||||||| ||| | ||| ||| | ||||||||||| || Sbjct 3421816 AGGGAGTTTCGGACACCGTGCTGCTTAATGGAAGCTCG-GAGGGTGGACCAGTCCCAGAG 3421874 Query 22636 ATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAAC--ACGCCGCGACTCGCCGGG 22693 |||| || | | |||| | |||| | || | || | | ||| | ||| Sbjct 3421875 GTCGGTTGGGACCCGAC---CCCAGAGATCGAACTGGAGTTTACCCTGGGACATG--GGG 3421929 Query 22694 CTGCCTTCGTACGTTTCGTACGGACCATATATCGCG-GCAAGTTCGCAGCTCGCCTCCAA 22752 || ||||| || |||||| ||| | || | || | ||||| |||||| | Sbjct 3421930 GAACCCTCGTATGTCTCGTACTTACCC-AGCTCCTGAGCCATCTCGCACGACGCCTCGAG 3421988 Query 22753 CGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTC 22812 ||| | | || || ||||||||||| | |||| | ||| ||||||| | || Sbjct 3421989 GGCGGCATGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTCGCGGGCGGCGGGGGACTC 3422048 Query 22813 GTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGG 22872 | | ||||| || | | || || ||||| || | |||||| || || | ||||| || Sbjct 3422049 GAAGGGCATGCGAAGCGCCATAAAGGCGTCGGCAAGACCCTGGACACCGAGACCGACGGG 3422108 Query 22873 TCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATT-CGAATCGAT-T 22930 |||| || || || | |||||| | ||| || | || || ||| | Sbjct 3422109 ACGGTGACGCATGTTGGAGTTCTGCGCCTCGATGACAGGGTAGTAGTTGCG---CGAGAT 3422165 Query 22931 GTTCTGTTCAAGTTTCT-GGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTA 22989 | ||| ||||| |||| ||| || | || || || | |||||| || Sbjct 3422166 GACCTGGTCAAGGTTCTTGGTGACGACCTTGGTGATTTCGTGGAGCTTCTTAAAGTCATA 3422225 Query 22990 AACGCCCGATTGTACA-----ACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACG 23044 || | | || | || || || | || ||||| |||||||| ||||| || Sbjct 3422226 GACTCGC--TTCTCCATGTCGACGAATGCGGGGAGGGCGAGGGAGGCAAGGTTGCAAACA 3422283 Query 23045 GCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATC 23104 || |||||||| || | |||||| | ||| |||||||| |||||| | || ||| Sbjct 3422284 GCAACCTCGTCGGGGGCAGAGTACTCGATAATCTCGGTACAGAGATTGGAGGATTTGATC 3422343 Query 23105 GTGCCCAAATTGCTCT-GGTT-GCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACG 23162 || || | | ||| | |||| | || || | || || ||||||||||||||| | | Sbjct 3422344 GTACCGAGGT-GCTGTTGGTTCGACTTGGCGTTCGC-CGCGTCCTTGTAGAGCATGAAGG 3422401 Query 23163 GCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACAC 23222 | ||||||||| || | ||| | || || ||| | |||| || | || Sbjct 3422402 GACCACCCGTCTCGGTTTGAGCCTCAAGAATGGCAAACCAGAGCTTCTGGGCCTTAATG- 3422460 Query 23223 GTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCG 23281 ||| || ||| ||| | | ||||||| | ||| | | || || | | | Sbjct 3422461 GTCTTTCGACCCTTGCCAGCCTTCTCGTACGACTCGTAGAGCTGCTCGAACTTCTCCGAG 3422520 Query 23282 TA-ACAGTCGGCCAGGCCGGGCGATT--GCATCGGACACATGAGACTCCACATTGAGTCA 23338 | ||| ||||| || ||||| | | ||| || |||||||| ||||| ||| Sbjct 3422521 TGGACA-TCGGCAAGACCGGGGCACTCGGCA--GGGCACATGAGTGTCCACTCGCCGTCC 3422577 Query 23339 TTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCG 23398 || || || |||| || || |||| ||||| || |||||||| || || || || Sbjct 3422578 GACTCGACCCGCTTCATGAAGAGGTCCGAGATCCAGAGGGCGTAGAAGAGGTCACGTGCA 3422637 Query 23399 CGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGC 23458 || |||||||| || ||| |||||| || || | || || || | ||| || ||| Sbjct 3422638 CGGACCTCCTCCTTACCGTGGTTCTTGCGCAGGTCGAGGAACTCGAAGATGTCGGCGTGC 3422697 Query 23459 CACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAA 23518 || ||||||||||| | ||||||||||||||| | || || |||||||| |||||||| Sbjct 3422698 CAGGGCTCGAGGTAGATGGCAAACGCGCCCGGACGTTTGTTACCGCCCTGGTCGACGTAT 3422757 Query 23519 CGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACG 23578 || |||||| || | || ||| ||||| || |||| |||||| || ||| Sbjct 3422758 CGCGCCGTGGCGTCGAACGCTCGGAGCATGGGTACGATACCGTTCGAGTACCCGTTGGTA 3422817 Query 23579 CCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCC 23638 || || | || || || || || || ||||| | ||||| || || || || | Sbjct 3422818 CCGGCAATGTAAGATCCCTTGGCGCGGACATTGTGGATGTGGAGTCCGATCCCGCCTGCA 3422877 Query 23639 GATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCT 23698 | || || ||| |||||| || || || || ||||| ||||| || ||| || Sbjct 3422878 GTCTTGGAGATCTGCGCGCACGTCTTGAGGGTCTCATAGATACCCTCAATCGAGTCGTCC 3422937 Query 23699 TTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGT 23758 || |||| || | ||| || || |||||||| | ||||| ||| |||| ||| || Sbjct 3422938 TTCATCGCCACGAGGAAGCAGGATGACATTTGGGGGTTGGGGGTACCGGCGTTGAAGAGG 3422997 Query 23759 GTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCA 23818 || ||| ||||| || ||||||| | ||||| || ||||| || || ||| | Sbjct 3422998 GTAGGGGAAGCGTGGGTGAAGTATCGCTCAGACATGAGGTTGTAGGTCTCAATGACCTTG 3423057 Query 23819 TCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCG 23878 ||||||| | ||||| ||||||| ||||| ||||| ||||||| || || | |||| Sbjct 3423058 TCAATGTTGGCACCGTGGATACCGACAGCGACACGCATAATCATGTGCTGGGGACGCTCG 3423117 Query 23879 AC 23880 || Sbjct 3423118 AC 3423119 Score = 145 bits (160), Expect = 7e-30 Identities = 234/334 (70%), Gaps = 2/334 (1%) Strand=Plus/Plus Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG-A 57865 |||||| | || || || | || || || |||||||| || ||| | |||||| || | Sbjct 11300 GAAAACATCCACTCTGAGACCTACTCCCTCCTCATCGACACCTACATCAAGGACCCCGCA 11359 Query 57866 CGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGA 57925 || || || || || |||| || || || || ||| ||| ||||| || || Sbjct 11360 CGCCGGACCTAC-CTCTTTGACGCCATTGAGACCATCCCCTGCATCAAGAAGAAAGCCGA 11418 Query 57926 GTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTT 57985 ||| | |||| ||||| | || || | |||| ||||| ||| | || ||||| || Sbjct 11419 CTGGGCGCTCAAGTGGATCACGGACGACAAGTCCACATTCGCTGAGCGTCTCATCGCCTT 11478 Query 57986 CGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAA 58045 ||||||||||| ||||| ||||| ||||| || || | || || ||| | ||||| Sbjct 11479 TGCCGCCGTCGAGGGTATCTTCTTCTCGGGTTCATTCGCCTCCATCTTCTGGCTCAAGAA 11538 Query 58046 ACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCT 58105 || || || |||||||| || || || ||||||| | || || || || |||||||| Sbjct 11539 GCGTGGTCTCATGCCCGGACTCACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCT 11598 Query 58106 CCATACTGATTTTGCGTGCCTAATGTACTCTCAC 58139 ||| || || ||||| ||||| | | ||| ||| Sbjct 11599 CCACACCGACTTTGCCTGCCTCCTCTTCTCCCAC 11632 >seq1 Length=3588805 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| ||||||||| | || ||||| ||||| Sbjct 3580275 ATGCAGATCTTCGTCAAGACCCTTACCGGCAAGACGATCACCCTTGAGGTTGAGTCGTCC 3580216 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||| || | ||||| |||||| Sbjct 3580215 GACACCATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCGCCAGACCAG 3580156 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| | || || ||||| || ||| ||||||| Sbjct 3580155 CAGCGATTGATCTTTGCTGGTAAGCAGCTGGAAGA 3580121 >seq4 Length=1954963 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 31214 CTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAA 31273 || || ||||| ||||||||| |||| || ||| ||||||||| |||| | ||||| Sbjct 837743 CTTACGGGCAAGACGATCACCCTCGAAGTCGAATCGTCCGACACCATCGACAATGTCAAG 837802 Query 31274 CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGC 31333 | || ||||||||| || | || || |||||||||||||| || ||||| ||| Sbjct 837803 GCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGTCTGATTTTCGCCGGC 837862 Query 31334 AAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTT 31393 || ||| |||| ||| | ||| || || || ||||| || || || || || || Sbjct 837863 AAGCAGCTGGAGGACGGTCGGACCCTGTCTGACTACAACATCCAGAAGGAGTCTACGCTC 837922 Query 31394 CATCTGGT 31401 || |||| Sbjct 837923 CACTTGGT 837930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766255125920