Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01]
26 sequences; 20,595,339 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq2 264 1e-65
seq1 104 2e-17
seq4 96.9 3e-15
>seq2
Length=3428829
Score = 264 bits (292), Expect = 1e-65
Identities = 937/1442 (65%), Gaps = 36/1442 (2%)
Strand=Plus/Plus
Query 22457 ACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCG 22516
|| || || || ||||| || | || ||||| ||| | |||||||| | || |||
Sbjct 3421696 ACGACCTGGAAATCGCCAGAAAGCACTCGGCGAGCGTAGAGCATGGATGTGTAGGGCTCG 3421755
Query 22517 AAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGT 22576
|| | || || || || ||||| | || || ||||| ||||| || || | ||
Sbjct 3421756 AAGCACTCGTTCCAGCCGAGAATCTGGGAAGTGGAGGCGGTAGGCATAGGGGCAACGAGG 3421815
Query 22577 AGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTA-CTCTTGAGCATCGACCAGTCCCACAG 22635
|| ||||||| | ||||||| ||| | ||| ||| | ||||||||||| ||
Sbjct 3421816 AGGGAGTTTCGGACACCGTGCTGCTTAATGGAAGCTCG-GAGGGTGGACCAGTCCCAGAG 3421874
Query 22636 ATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAAC--ACGCCGCGACTCGCCGGG 22693
|||| || | | |||| | |||| | || | || | | ||| | |||
Sbjct 3421875 GTCGGTTGGGACCCGAC---CCCAGAGATCGAACTGGAGTTTACCCTGGGACATG--GGG 3421929
Query 22694 CTGCCTTCGTACGTTTCGTACGGACCATATATCGCG-GCAAGTTCGCAGCTCGCCTCCAA 22752
|| ||||| || |||||| ||| | || | || | ||||| |||||| |
Sbjct 3421930 GAACCCTCGTATGTCTCGTACTTACCC-AGCTCCTGAGCCATCTCGCACGACGCCTCGAG 3421988
Query 22753 CGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTC 22812
||| | | || || ||||||||||| | |||| | ||| ||||||| | ||
Sbjct 3421989 GGCGGCATGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTCGCGGGCGGCGGGGGACTC 3422048
Query 22813 GTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGG 22872
| | ||||| || | | || || ||||| || | |||||| || || | ||||| ||
Sbjct 3422049 GAAGGGCATGCGAAGCGCCATAAAGGCGTCGGCAAGACCCTGGACACCGAGACCGACGGG 3422108
Query 22873 TCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATT-CGAATCGAT-T 22930
|||| || || || | |||||| | ||| || | || || ||| |
Sbjct 3422109 ACGGTGACGCATGTTGGAGTTCTGCGCCTCGATGACAGGGTAGTAGTTGCG---CGAGAT 3422165
Query 22931 GTTCTGTTCAAGTTTCT-GGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTA 22989
| ||| ||||| |||| ||| || | || || || | |||||| ||
Sbjct 3422166 GACCTGGTCAAGGTTCTTGGTGACGACCTTGGTGATTTCGTGGAGCTTCTTAAAGTCATA 3422225
Query 22990 AACGCCCGATTGTACA-----ACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACG 23044
|| | | || | || || || | || ||||| |||||||| ||||| ||
Sbjct 3422226 GACTCGC--TTCTCCATGTCGACGAATGCGGGGAGGGCGAGGGAGGCAAGGTTGCAAACA 3422283
Query 23045 GCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATC 23104
|| |||||||| || | |||||| | ||| |||||||| |||||| | || |||
Sbjct 3422284 GCAACCTCGTCGGGGGCAGAGTACTCGATAATCTCGGTACAGAGATTGGAGGATTTGATC 3422343
Query 23105 GTGCCCAAATTGCTCT-GGTT-GCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACG 23162
|| || | | ||| | |||| | || || | || || ||||||||||||||| | |
Sbjct 3422344 GTACCGAGGT-GCTGTTGGTTCGACTTGGCGTTCGC-CGCGTCCTTGTAGAGCATGAAGG 3422401
Query 23163 GCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACAC 23222
| ||||||||| || | ||| | || || ||| | |||| || | ||
Sbjct 3422402 GACCACCCGTCTCGGTTTGAGCCTCAAGAATGGCAAACCAGAGCTTCTGGGCCTTAATG- 3422460
Query 23223 GTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCG 23281
||| || ||| ||| | | ||||||| | ||| | | || || | | |
Sbjct 3422461 GTCTTTCGACCCTTGCCAGCCTTCTCGTACGACTCGTAGAGCTGCTCGAACTTCTCCGAG 3422520
Query 23282 TA-ACAGTCGGCCAGGCCGGGCGATT--GCATCGGACACATGAGACTCCACATTGAGTCA 23338
| ||| ||||| || ||||| | | ||| || |||||||| ||||| |||
Sbjct 3422521 TGGACA-TCGGCAAGACCGGGGCACTCGGCA--GGGCACATGAGTGTCCACTCGCCGTCC 3422577
Query 23339 TTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCG 23398
|| || || |||| || || |||| ||||| || |||||||| || || || ||
Sbjct 3422578 GACTCGACCCGCTTCATGAAGAGGTCCGAGATCCAGAGGGCGTAGAAGAGGTCACGTGCA 3422637
Query 23399 CGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGC 23458
|| |||||||| || ||| |||||| || || | || || || | ||| || |||
Sbjct 3422638 CGGACCTCCTCCTTACCGTGGTTCTTGCGCAGGTCGAGGAACTCGAAGATGTCGGCGTGC 3422697
Query 23459 CACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAA 23518
|| ||||||||||| | ||||||||||||||| | || || |||||||| ||||||||
Sbjct 3422698 CAGGGCTCGAGGTAGATGGCAAACGCGCCCGGACGTTTGTTACCGCCCTGGTCGACGTAT 3422757
Query 23519 CGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACG 23578
|| |||||| || | || ||| ||||| || |||| |||||| || |||
Sbjct 3422758 CGCGCCGTGGCGTCGAACGCTCGGAGCATGGGTACGATACCGTTCGAGTACCCGTTGGTA 3422817
Query 23579 CCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCC 23638
|| || | || || || || || || ||||| | ||||| || || || || |
Sbjct 3422818 CCGGCAATGTAAGATCCCTTGGCGCGGACATTGTGGATGTGGAGTCCGATCCCGCCTGCA 3422877
Query 23639 GATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCT 23698
| || || ||| |||||| || || || || ||||| ||||| || ||| ||
Sbjct 3422878 GTCTTGGAGATCTGCGCGCACGTCTTGAGGGTCTCATAGATACCCTCAATCGAGTCGTCC 3422937
Query 23699 TTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGT 23758
|| |||| || | ||| || || |||||||| | ||||| ||| |||| ||| ||
Sbjct 3422938 TTCATCGCCACGAGGAAGCAGGATGACATTTGGGGGTTGGGGGTACCGGCGTTGAAGAGG 3422997
Query 23759 GTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCA 23818
|| ||| ||||| || ||||||| | ||||| || ||||| || || ||| |
Sbjct 3422998 GTAGGGGAAGCGTGGGTGAAGTATCGCTCAGACATGAGGTTGTAGGTCTCAATGACCTTG 3423057
Query 23819 TCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCG 23878
||||||| | ||||| ||||||| ||||| ||||| ||||||| || || | ||||
Sbjct 3423058 TCAATGTTGGCACCGTGGATACCGACAGCGACACGCATAATCATGTGCTGGGGACGCTCG 3423117
Query 23879 AC 23880
||
Sbjct 3423118 AC 3423119
Score = 145 bits (160), Expect = 7e-30
Identities = 234/334 (70%), Gaps = 2/334 (1%)
Strand=Plus/Plus
Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG-A 57865
|||||| | || || || | || || || |||||||| || ||| | |||||| || |
Sbjct 11300 GAAAACATCCACTCTGAGACCTACTCCCTCCTCATCGACACCTACATCAAGGACCCCGCA 11359
Query 57866 CGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGA 57925
|| || || || || |||| || || || || ||| ||| ||||| || ||
Sbjct 11360 CGCCGGACCTAC-CTCTTTGACGCCATTGAGACCATCCCCTGCATCAAGAAGAAAGCCGA 11418
Query 57926 GTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTT 57985
||| | |||| ||||| | || || | |||| ||||| ||| | || ||||| ||
Sbjct 11419 CTGGGCGCTCAAGTGGATCACGGACGACAAGTCCACATTCGCTGAGCGTCTCATCGCCTT 11478
Query 57986 CGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAA 58045
||||||||||| ||||| ||||| ||||| || || | || || ||| | |||||
Sbjct 11479 TGCCGCCGTCGAGGGTATCTTCTTCTCGGGTTCATTCGCCTCCATCTTCTGGCTCAAGAA 11538
Query 58046 ACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCT 58105
|| || || |||||||| || || || ||||||| | || || || || ||||||||
Sbjct 11539 GCGTGGTCTCATGCCCGGACTCACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCT 11598
Query 58106 CCATACTGATTTTGCGTGCCTAATGTACTCTCAC 58139
||| || || ||||| ||||| | | ||| |||
Sbjct 11599 CCACACCGACTTTGCCTGCCTCCTCTTCTCCCAC 11632
>seq1
Length=3588805
Score = 104 bits (114), Expect = 2e-17
Identities = 116/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| || || ||||| ||||||||| | || ||||| |||||
Sbjct 3580275 ATGCAGATCTTCGTCAAGACCCTTACCGGCAAGACGATCACCCTTGAGGTTGAGTCGTCC 3580216
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | ||||| || || ||||||||| || | ||||| ||||||
Sbjct 3580215 GACACCATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCGCCAGACCAG 3580156
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
||||| | || || ||||| || ||| |||||||
Sbjct 3580155 CAGCGATTGATCTTTGCTGGTAAGCAGCTGGAAGA 3580121
>seq4
Length=1954963
Score = 96.9 bits (106), Expect = 3e-15
Identities = 134/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 31214 CTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAA 31273
|| || ||||| ||||||||| |||| || ||| ||||||||| |||| | |||||
Sbjct 837743 CTTACGGGCAAGACGATCACCCTCGAAGTCGAATCGTCCGACACCATCGACAATGTCAAG 837802
Query 31274 CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGC 31333
| || ||||||||| || | || || |||||||||||||| || ||||| |||
Sbjct 837803 GCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGTCTGATTTTCGCCGGC 837862
Query 31334 AAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTT 31393
|| ||| |||| ||| | ||| || || || ||||| || || || || || ||
Sbjct 837863 AAGCAGCTGGAGGACGGTCGGACCCTGTCTGACTACAACATCCAGAAGGAGTCTACGCTC 837922
Query 31394 CATCTGGT 31401
|| ||||
Sbjct 837923 CACTTGGT 837930
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445766255125920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |