Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2 136 5e-27 seq5 82.4 1e-10 >seq2 Length=3428829 Score = 136 bits (150), Expect = 5e-27 Identities = 181/249 (73%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || ||| ||| |||||||| || | | || | ||||| || || |||||| Sbjct 11616 CAGGCAAAGTCGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTGAGT 11557 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| || |||||||| || ||||| || ||||| |||||||| || || |||||| Sbjct 11556 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAATGAACCCGAGAAGAAG 11497 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT--GT- 33758 || || || || || |||||||| || || | ||| | | || |||| | || Sbjct 11496 ATACCCTCGACGGCGGCAAAGGCGATGAGACGCTCAGCGAATGTGGACTTGTCGTCCGTG 11437 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 |||||||| | ||||| ||||| ||||| || | || || || || || ||||| | | Sbjct 11436 ATCCACTTGAGCGCCCAGTCGGCTTTCTTCTTGATGCAGGGGATGGTCTCAATGGCGTCA 11377 Query 33819 AAGAGATAG 33827 ||||| ||| Sbjct 11376 AAGAGGTAG 11368 Score = 122 bits (134), Expect = 1e-22 Identities = 425/658 (65%), Gaps = 4/658 (1%) Strand=Plus/Plus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 || ||||| | | |||||| ||||| || || || ||||| ||||| || | ||| Sbjct 3422551 GGGCACATGAGTGTCCACTCGCCGTCCGACTCGACCCGCTTCATGAAGAGGTCCGAGATC 3422610 Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353 || || || || || || | || | ||||| || || ||||| || Sbjct 3422611 CAGAGGGCGTAGAAGAGGTCACGTGCACGGACCTCCTCCTTACCGTGGTTCTTGCGCAGG 3422670 Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413 ||||||||| | | || || | ||||| || || | ||| ||||| | | || || Sbjct 3422671 TCGAGGAACTCGAAGATGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAACGCGCCCGGA 3422730 Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473 |||||||| || ||||| || | ||||| || ||| | | ||| | ||| || Sbjct 3422731 CGTTTGTTACCGCCCTGGTCGACGTATCGCGCCGTGGCGTCGAACGCTCGGAGCATGGGT 3422790 Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTA 63533 | |||||||| || || |||||||||| || || ||| |||| || | ||| Sbjct 3422791 ACGATACCGTTCGAGTACCCGTTGGTACCGGCAATGTAAGATCCCTTGGCGCGGACATTG 3422850 Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG-T 63592 || || || || || ||||| | || ||||| ||||| ||| || | | | Sbjct 3422851 TGGATGTGGAGTCCGATCCCGCCTGCAGTCTTGGAGATCTGCGCGCA-CGTCTTGAGGGT 3422909 Query 63593 GTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG 63652 |||||||| || || || || || |||| | || || ||| |||||||| Sbjct 3422910 CTCATAGATACCCTCAATCGAGTCGTCCTTCATCGCCACGAGGAAGCAGGATGACATTTG 3422969 Query 63653 GTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 63712 | | | || || || || || | |||||| |||||||| || || || ||||| Sbjct 3422970 GGGGTTGGGGGTACCGGCGTTGAAGAGGGTAGGGGAAGCGTGGGTGAAGTATCGCTCAGA 3423029 Query 63713 AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGA 63771 | || ||||| |||||||| | ||| || | || | || || || || |||| Sbjct 3423030 CATGAGGTTGTAGGTCTCAATGACCTTGTCAATGTTGGCACCG-TGGATACCGACAGCGA 3423088 Query 63772 CACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGG 63831 ||||||| | ||||||||| || | || || ||||| ||| | | | ||||| Sbjct 3423089 CACGCATAATCATGTGCTGGGGACGCTCGACGATTTTACCGTTGACGCGAAGGAGGTAGG 3423148 Query 63832 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 || || | || || || ||||| |||||||| | |||||| || | ||| || || Sbjct 3423149 ATCGCTCGAGGGTCTTGAACCCAAAGTAGTTGTAGGCAAAGTCCCGGTTGTAGATGAT 3423206 >seq5 Length=1923346 Score = 82.4 bits (90), Expect = 1e-10 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 33603 CCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 33662 ||||| |||| || || | ||||| || || || | ||||||||| || ||||| || Sbjct 661446 CCCTCATCTCGGCTGATAAGCTCGTTCGAGAATGTCAATCCGGGCATCAGACCACGTTTC 661505 Query 33663 TTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAG 33722 || | ||| || |||| ||||| ||||| ||||||||||| ||||| || ||||| Sbjct 661506 TTTAACCAGAAGATGGCGGCGAAAGATCCCGAAAAGAAGATGCCTTCGACACACGCAAAA 661565 Query 33723 GCAATAAG 33730 || | ||| Sbjct 661566 GCGACAAG 661573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817395309280