Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2 132 6e-26 >seq2 Length=3428829 Score = 132 bits (146), Expect = 6e-26 Identities = 180/249 (72%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || || ||| ||| |||||||| || | | || | |||||||| || |||||| Sbjct 11616 CAGGCAAAGTCGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTGAGT 11557 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 |||||||| || |||||||| || ||||| || ||||| || ||||| || || ||||| Sbjct 11556 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAATGAACCCGAGAAGAAG 11497 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT--GT- 36334 || || || || || |||||||| || || | ||| | | || |||| | || Sbjct 11496 ATACCCTCGACGGCGGCAAAGGCGATGAGACGCTCAGCGAATGTGGACTTGTCGTCCGTG 11437 Query 36335 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 36394 |||||||| | ||||| ||||| ||||| || | || || || ||||| || || | | Sbjct 11436 ATCCACTTGAGCGCCCAGTCGGCTTTCTTCTTGATGCAGGGGATGGTCTCAATGGCGTCA 11377 Query 36395 AAGAGATAG 36403 ||||| ||| Sbjct 11376 AAGAGGTAG 11368 Score = 107 bits (118), Expect = 3e-18 Identities = 361/554 (65%), Gaps = 6/554 (1%) Strand=Plus/Plus Query 66144 AGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCA 66203 || ||||||||| | | || || ||||| || || | ||| ||||| | | || Sbjct 3422668 AGGTCGAGGAACTCGAAGATGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAACGCGCCC 3422727 Query 66204 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 66263 || |||||||| || ||||| || | ||||| || ||| | | ||| | ||| Sbjct 3422728 GGACGTTTGTTACCGCCCTGGTCGACGTATCGCGCCGTGGCGTCGAACGCTCGGAGCATG 3422787 Query 66264 GGAATAATACCATTGGATGTACCA-TTGGTCCCGGAGATATAGCTTCCACTTGCACGAAT 66322 || | ||||| || || ||||| ||||| |||| || || ||| | || || | Sbjct 3422788 GGTACGATACCGTTCGA-GTACCCGTTGGTACCGGCAATGTAAGATCCCTTGGCGCGGAC 3422846 Query 66323 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 66382 ||| || || || || || ||||| | || ||||| ||||| ||| || | Sbjct 3422847 ATTGTGGATGTGGAGTCCGATCCCGCCTGCAGTCTTGGAGATCTGCGCGCA-CGTCTTGA 3422905 Query 66383 CG-TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA 66441 | | |||||||| ||||| || || ||| |||| | || || ||| |||| Sbjct 3422906 GGGTCTCATAGATACCCTCAATCGAGTCGTCCTTCATCGCCACGAGGAAGCAGGATGACA 3422965 Query 66442 TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 66501 ||||| | || || || || || | |||||| |||||||| || || || | Sbjct 3422966 TTTGGGGGTTGGGGGTACCGGCGTTGAAGAGGGTAGGGGAAGCGTGGGTGAAGTATCGCT 3423025 Query 66502 CAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACT 66560 |||| | || ||||| |||||||| | ||| || | || | || || || || Sbjct 3423026 CAGACATGAGGTTGTAGGTCTCAATGACCTTGTCAATGTTGGCACCG-TGGATACCGACA 3423084 Query 66561 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAG 66620 ||||||||||| | ||||||||| || | || ||||| || ||| | | | | Sbjct 3423085 GCGACACGCATAATCATGTGCTGGGGACGCTCGACGATTTTACCGTTGACGCGAAGGAGG 3423144 Query 66621 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 66680 |||||| || | || || || ||||| |||||||| | |||||| || | ||| || Sbjct 3423145 TAGGATCGCTCGAGGGTCTTGAACCCAAAGTAGTTGTAGGCAAAGTCCCGGTTGTAGATG 3423204 Query 66681 ATAACCGAGTTGAG 66694 || | |||| ||| Sbjct 3423205 ATGGCAGAGTCGAG 3423218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172586093840