Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2 145 1e-29 >seq2 Length=3428829 Score = 145 bits (160), Expect = 1e-29 Identities = 183/249 (73%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| ||| |||||||| || | | || || |||||||| || |||||| Sbjct 11616 CAGGCAAAGTCGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTGAGT 11557 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| || |||||||| || ||||| || ||||| || ||||| || || |||||| Sbjct 11556 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAATGAACCCGAGAAGAAG 11497 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCAT--GT- 50136 || || || || ||||||||||| | || | ||| | | ||| |||| | || Sbjct 11496 ATACCCTCGACGGCGGCAAAGGCGATGAGACGCTCAGCGAATGTGGACTTGTCGTCCGTG 11437 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 |||||||| | ||||| ||||| ||||| || | || || || || || ||||| | | Sbjct 11436 ATCCACTTGAGCGCCCAGTCGGCTTTCTTCTTGATGCAGGGGATGGTCTCAATGGCGTCA 11377 Query 50197 AAGAGATAG 50205 ||||| ||| Sbjct 11376 AAGAGGTAG 11368 Score = 123 bits (136), Expect = 4e-23 Identities = 451/698 (65%), Gaps = 6/698 (1%) Strand=Plus/Plus Query 79879 ACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT 79938 |||||| | | || || || ||| |||| ||||| | | |||||| || || || Sbjct 3422524 ACATCGGCAAGACCGGGGCACTCGGCAGGGCACATGAGTGTCCACTCGCCGTCCGACTCG 3422583 Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 || || ||||| ||||| || | ||||| || || || || || | | | | Sbjct 3422584 ACCCGCTTCATGAAGAGGTCCGAGATCCAGAGGGCGTAGAAGAGGTCACGTGCACGGACC 3422643 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 ||||| || || ||||| || ||||||||| | | || || | ||||| || Sbjct 3422644 TCCTCCTTACCGTGGTTCTTGCGCAGGTCGAGGAACTCGAAGATGTCGGCGTGCCAGGGC 3422703 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 80118 || | ||| ||||| | | ||||| |||||||| || ||||| || | ||||| || Sbjct 3422704 TCGAGGTAGATGGCAAACGCGCCCGGACGTTTGTTACCGCCCTGGTCGACGTATCGCGCC 3422763 Query 80119 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCA-TTGGTCCCGGA 80177 ||| | | ||| | ||| || | ||||| || || ||||| ||||| |||| Sbjct 3422764 GTGGCGTCGAACGCTCGGAGCATGGGTACGATACCGTTCGA-GTACCCGTTGGTACCGGC 3422822 Query 80178 GATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTT 80237 || || ||| |||| || | ||| || || || || || ||||| | || Sbjct 3422823 AATGTAAGATCCCTTGGCGCGGACATTGTGGATGTGGAGTCCGATCCCGCCTGCAGTCTT 3422882 Query 80238 AGAGATTAATGCGCATCGTTTTAACG-TATCATAGATGCCCTCTATGCTATCATCAATCA 80296 ||||| ||||| ||| || | | | |||||||| ||||| || || || ||| Sbjct 3422883 GGAGATCTGCGCGCA-CGTCTTGAGGGTCTCATAGATACCCTCAATCGAGTCGTCCTTCA 3422941 Query 80297 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 80356 | | || || ||| ||||||||| | || || || || || | ||||| Sbjct 3422942 TCGCCACGAGGAAGCAGGATGACATTTGGGGGTTGGGGGTACCGGCGTTGAAGAGGGTAG 3423001 Query 80357 GAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTA 80416 | |||||||| || || || ||||||| || ||||| |||||||| | || | Sbjct 3423002 GGGAAGCGTGGGTGAAGTATCGCTCAGACATGAGGTTGTAGGTCTCAATGACCTTGTCAA 3423061 Query 80417 TATCC-CATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACG 80475 | | || | || || || || ||||||||||| | ||||||||| || | || ||| Sbjct 3423062 TGTTGGCACCG-TGGATACCGACAGCGACACGCATAATCATGTGCTGGGGACGCTCGACG 3423120 Query 80476 ATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 80535 || || || | | | ||| ||| || | || || || ||||| |||||| Sbjct 3423121 ATTTTACCGTTGACGCGAAGGAGGTAGGATCGCTCGAGGGTCTTGAACCCAAAGTAGTTG 3423180 Query 80536 TATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 80573 || | |||||| || | ||| || || | |||| ||| Sbjct 3423181 TAGGCAAAGTCCCGGTTGTAGATGATGGCAGAGTCGAG 3423218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268566562640