Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 136 5e-27 >seq2 Length=3428829 Score = 136 bits (150), Expect = 5e-27 Identities = 181/249 (73%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||| ||| ||||||||||| | | || | |||||||| || |||||| Sbjct 11616 CAGGCAAAGTCGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTGAGT 11557 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| || |||||||| || ||||| || || || || ||||| || || |||||| Sbjct 11556 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAATGAACCCGAGAAGAAG 11497 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT--GT- 42241 || || || || || |||||||| || || | ||| | | || |||| | || Sbjct 11496 ATACCCTCGACGGCGGCAAAGGCGATGAGACGCTCAGCGAATGTGGACTTGTCGTCCGTG 11437 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 |||||||| | ||||| ||||| ||||| || | || || || || || ||||| | | Sbjct 11436 ATCCACTTGAGCGCCCAGTCGGCTTTCTTCTTGATGCAGGGGATGGTCTCAATGGCGTCA 11377 Query 42302 AAGAGATAG 42310 ||||| ||| Sbjct 11376 AAGAGGTAG 11368 Score = 113 bits (124), Expect = 6e-20 Identities = 423/658 (64%), Gaps = 4/658 (1%) Strand=Plus/Plus Query 71989 GGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATC 72048 || ||||| | || |||||| || || | || || ||||| ||||| || | ||| Sbjct 3422551 GGGCACATGAGTGTCCACTCGCCGTCCGACTCGACCCGCTTCATGAAGAGGTCCGAGATC 3422610 Query 72049 CAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGA 72108 || || || || || || | | | |||||| || || ||||| || Sbjct 3422611 CAGAGGGCGTAGAAGAGGTCACGTGCACGGACCTCCTCCTTACCGTGGTTCTTGCGCAGG 3422670 Query 72109 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGC 72168 ||||||||| | | || || | ||||| || || | ||| ||||| | | ||||| Sbjct 3422671 TCGAGGAACTCGAAGATGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAACGCGCCCGGA 3422730 Query 72169 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 72228 |||||||| || ||||| || | ||||| || ||| | | ||| | ||| || Sbjct 3422731 CGTTTGTTACCGCCCTGGTCGACGTATCGCGCCGTGGCGTCGAACGCTCGGAGCATGGGT 3422790 Query 72229 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTG 72288 | ||||| || || || ||||| |||| || || ||| |||| || | |||| Sbjct 3422791 ACGATACCGTTCGAGTACCCGTTGGTACCGGCAATGTAAGATCCCTTGGCGCGGACATTG 3422850 Query 72289 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG-T 72347 || || || || || ||||| | || ||||| ||||| ||| || | | | Sbjct 3422851 TGGATGTGGAGTCCGATCCCGCCTGCAGTCTTGGAGATCTGCGCGCA-CGTCTTGAGGGT 3422909 Query 72348 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG 72407 |||||||| ||||| || || ||| |||| | || || ||| |||||||| Sbjct 3422910 CTCATAGATACCCTCAATCGAGTCGTCCTTCATCGCCACGAGGAAGCAGGATGACATTTG 3422969 Query 72408 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 72467 | | || || || || || | |||||| |||||||| || || || ||||| Sbjct 3422970 GGGGTTGGGGGTACCGGCGTTGAAGAGGGTAGGGGAAGCGTGGGTGAAGTATCGCTCAGA 3423029 Query 72468 CAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGA 72526 || || ||||| |||||||| | || || | || | || || || || |||| Sbjct 3423030 CATGAGGTTGTAGGTCTCAATGACCTTGTCAATGTTGGCACCG-TGGATACCGACAGCGA 3423088 Query 72527 CACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGG 72586 ||||||| | ||| ||||| || | || ||||| || || | | | ||||| Sbjct 3423089 CACGCATAATCATGTGCTGGGGACGCTCGACGATTTTACCGTTGACGCGAAGGAGGTAGG 3423148 Query 72587 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 || || | || || || ||||| |||||||| | |||||| || | ||| || || Sbjct 3423149 ATCGCTCGAGGGTCTTGAACCCAAAGTAGTTGTAGGCAAAGTCCCGGTTGTAGATGAT 3423206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138981879760