Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2 129 9e-25 >seq2 Length=3428829 Score = 129 bits (142), Expect = 9e-25 Identities = 139/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 125390 GTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGA 125449 ||||||| ||||||||||| | | ||| || | || | || || |||||||| || Sbjct 11431 GTGGATCACGGACGACAAGTCCACATTCGCTGAGCGTCTCATCGCCTTTGCCGCCGTCGA 11490 Query 125450 GGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCAT 125509 ||| |||||||| |||||| || || ||||||| |||||||||||||| || ||||| Sbjct 11491 GGGTATCTTCTTCTCGGGTTCATTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCAT 11550 Query 125510 GCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTT 125569 ||||||||| || | |||||| | || ||||| || ||||| || ||| ||||| Sbjct 11551 GCCCGGACTCACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTCCACACCGACTT 11610 Query 125570 TGCC 125573 |||| Sbjct 11611 TGCC 11614 Score = 116 bits (128), Expect = 5e-21 Identities = 343/520 (66%), Gaps = 8/520 (2%) Strand=Plus/Minus Query 96831 GTGCCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTACACAGGGCGGCAATAAA 96890 || || |||||| || || | | || | | | |||||||| |||||||| || ||| Sbjct 3422792 GTACCCATGCTCCGAGCGTTCGACGCCACGGCGCGATACGTCGACCAGGGCGGTAACAAA 3422733 Query 96891 CGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATC 96950 || || ||||| | ||| ||||| | || || |||||||| ||| | || || || || Sbjct 3422732 CGTCCGGGCGCGTTTGCCATCTACCTCGAGCCCTGGCACGCCGACATCTTCGAGTTCCTC 3422673 Query 96951 GAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTC 97010 || ||||||| ||| || || |||| || || | ||| | || || || ||| Sbjct 3422672 GACCTGCGCAAGAACCACGGTAAGGAGGAGGTCCGTGCACGTGACCTCTTCTACGCCCTC 3422613 Query 97011 TGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGG-TGGCTACTGGAGCCTAATGTG 97069 ||| | | || | ||||||||||| ||| | | ||| ||| | |||| || ||||| Sbjct 3422612 TGGATCTCGGACCTCTTCATGAAGCGGGTCGA-GTCGGACGGCGAGTGGACACTCATGTG 3422554 Query 97070 CCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACAC 97129 ||| | | || |||||||| ||||| | || |||| ||| ||| Sbjct 3422553 CCCTGCCGAGTGCCCCGGTCTTGCCGATGTCCACTCGGAGAAGTTCGAGCAGCTCTACGA 3422494 Query 97130 GGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGCACGAGAA-CTGTGGAAG 97187 | | |||||| | | ||| | || |||| | | | | | |||| || ||| Sbjct 3422493 GTCGTACGAGAAGGCTGGCAAGGGTCGAAAGACCATT--AAGGCCCAGAAGCTCTGGTTT 3422436 Query 97188 GCCA-TCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGT 97246 |||| || ||| |||||| ||||| || ||| | ||| ||||||||||| | | Sbjct 3422435 GCCATTCTTGA-GGCTCAAACCGAGACGGGTGGTCCCTTCATGCTCTACAAGGACGCGGC 3422377 Query 97247 GAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGA 97306 ||| ||| ||||||| ||| | || || ||||| ||||||||| || || || Sbjct 3422376 GAACGCCAAGTCGAACCAACAGCACCTCGGTACGATCAAATCCTCCAATCTCTGTACCGA 3422317 Query 97307 AATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 ||| | |||||| | | || |||||| || |||||| Sbjct 3422316 GATTATCGAGTACTCTGCCCCCGACGAGGTTGCTGTTTGC 3422277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058959155760