Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1 129 5e-25 seq4 82.4 7e-11 >seq1 Length=3588805 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || ||||||||||| || | ||||| || || ||||| || | || || ||| | Sbjct 3579776 CCACCCCTCAATCGCAAGACGAGGTGCAGTGTTGACTCCTTCTGGATATTGTAGTCGGAC 3579835 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| || |||||||| ||| ||||||| |||| || || ||||| || Sbjct 3579836 AGCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAATCGCTGTTGGTCTGGGGGG 3579895 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGAC 94959 ||||| || ||||| | || || ||||| || | ||| ||||| || | || || Sbjct 3579896 ATACCCTCCTTGTCCTGGATCTTCGCCTTTACATTGTCGATGGTGTC-GCTCGACTCAAC 3579954 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| ||||||||||| ||||| || ||||| |||||||||||||| Sbjct 3579955 CTCAAGAGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 3580002 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || ||||||| |||| ||||| ||||| || ||||| || || Sbjct 3580120 ATCTTCCAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCTGGCGGGATACCCTCCTT 3580179 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || |||||||| | ||| ||||| | || || |||| ||||| Sbjct 3580180 GTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCGGACGACTCAACCTCAAGGGTGAT 3580239 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || ||||| || || || ||||||||||| Sbjct 3580240 CGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 3580275 >seq4 Length=1954963 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||||||||||||| | ||||| ||||| || | ||| || || || | || || Sbjct 837936 CGCAACACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGACA--GGGTCCGAC 837879 Query 94853 --TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||||||||||| || ||| | || || | | ||||| ||||| |||||||| || | Sbjct 837878 CGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCTGGGGGAATACCCTCCT 837819 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | || || |||||||| | ||| ||||| | ||||| || | |||| Sbjct 837818 TGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGACGATTCGACTTCGAGGGTGA 837759 Query 94971 TGGTTTTTCCAGTAAG 94986 | || || || ||||| Sbjct 837758 TCGTCTTGCCCGTAAG 837743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448291054305360