Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01]
26 sequences; 20,595,339 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq1 129 5e-25
seq4 82.4 7e-11
>seq1
Length=3588805
Score = 129 bits (142), Expect = 5e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| || ||||||||||| || | ||||| || || ||||| || | || || ||| |
Sbjct 3579776 CCACCCCTCAATCGCAAGACGAGGTGCAGTGTTGACTCCTTCTGGATATTGTAGTCGGAC 3579835
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| | ||| || |||||||| ||| ||||||| |||| || || ||||| ||
Sbjct 3579836 AGCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAATCGCTGTTGGTCTGGGGGG 3579895
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGAC 94959
||||| || ||||| | || || ||||| || | ||| ||||| || | || ||
Sbjct 3579896 ATACCCTCCTTGTCCTGGATCTTCGCCTTTACATTGTCGATGGTGTC-GCTCGACTCAAC 3579954
Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||| ||||||||||| ||||| || ||||| ||||||||||||||
Sbjct 3579955 CTCAAGAGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 3580002
Score = 96.9 bits (106), Expect = 3e-15
Identities = 115/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| |||||||| || || ||||||| |||| ||||| ||||| || ||||| || ||
Sbjct 3580120 ATCTTCCAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCTGGCGGGATACCCTCCTT 3580179
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
||| | ||| || |||||||| | ||| ||||| | || || |||| |||||
Sbjct 3580180 GTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCGGACGACTCAACCTCAAGGGTGAT 3580239
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || ||||| || || || |||||||||||
Sbjct 3580240 CGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 3580275
>seq4
Length=1954963
Score = 82.4 bits (90), Expect = 7e-11
Identities = 137/196 (70%), Gaps = 4/196 (2%)
Strand=Plus/Minus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
|||||||||||||| | ||||| ||||| || | ||| || || || | || ||
Sbjct 837936 CGCAACACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGACA--GGGTCCGAC 837879
Query 94853 --TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910
||||||||||| || ||| | || || | | ||||| ||||| |||||||| || |
Sbjct 837878 CGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCTGGGGGAATACCCTCCT 837819
Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970
|||| | || || |||||||| | ||| ||||| | ||||| || | ||||
Sbjct 837818 TGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGACGATTCGACTTCGAGGGTGA 837759
Query 94971 TGGTTTTTCCAGTAAG 94986
| || || || |||||
Sbjct 837758 TCGTCTTGCCCGTAAG 837743
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448291054305360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |