Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2 407 4e-108 >seq2 Length=3428829 Score = 407 bits (450), Expect = 4e-108 Identities = 1068/1623 (66%), Gaps = 20/1623 (1%) Strand=Plus/Minus Query 363400 AAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAG 363459 ||||| | ||| ||||||||| ||| |||| ||| | || || || || || ||| Sbjct 3423164 AAGACCCTCGAGCGATCCTACCTCCTTCGCGTCAACGGTAAAATCGTCGAGCGTCCCCAG 3423105 Query 363460 CATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAA 363519 || ||| | |||||||| ||| | |||||||| | | | |||| | ||||| Sbjct 3423104 CACATGATTATGCGTGTCGCTGTCGGTATCCACGGTGCCAACATTGACAAGGTCATTGAG 3423045 Query 363520 ACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGCCAACAATGTACAATGCT 363579 || || || || | || || ||||| ||||| | || || | | ||| || Sbjct 3423044 ACCTACAACCTCATGTCTGAGCGATACTTCACCCACGCTTCCCCTACCCTCTTCAACGCC 3422985 Query 363580 GGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATC 363639 || || | || || || ||||| || ||||| || | ||||||||||| || || Sbjct 3422984 GGTACCCCCAACCCCCAAATGTCATCCTGCTTCCTCGTGGCGATGAAGGACGACTCGATT 3422925 Query 363640 GAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATT 363699 |||||||||| ||| || || |||| || || | || ||||||| ||||||||| || Sbjct 3422924 GAGGGTATCTATGAGACCCTCAAGACGTGCGCGCAGATCTCCAAGACTGCAGGCGGGATC 3422865 Query 363700 GGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGGCACAGGGGGATAC 363759 || | ||||||||||| || || || ||||||| ||| || || ||| Sbjct 3422864 GGACTCCACATCCACAATGTCCGCGCCAAGGGATCTTACATTGCCGGTACCAACGGGTAC 3422805 Query 363760 TCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAG 363819 ||||| || | || |||||||| || | ||| ||| || ||| | |||||||||||| Sbjct 3422804 TCGAACGGTATCGTACCCATGCTCCGAGCGTTCGACGCCACGGCGCGATACGTCGACCAG 3422745 Query 363820 GGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATT 363879 || || || || || |||||||| || || |||||||| || ||||| || Sbjct 3422744 GGCGGTAACAAACGTCCGGGCGCGTTTGCCATCTACCTCGAGCCCTGGCACGCCGACATC 3422685 Query 363880 TTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTG 363939 || ||||| || || || || || ||| || || ||||| | ||||||||||| || Sbjct 3422684 TTCGAGTTCCTCGACCTGCGCAAGAACCACGGTAAGGAGGAGGTCCGTGCACGTGACCTC 3422625 Query 363940 TTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGG 363999 ||||| || || ||| | || |||| || |||||||| || ||| | | | ||| Sbjct 3422624 TTCTACGCCCTCTGGATCTCGGACCTCTTCATGAAGCGGGTCGAGTCGGACGGCGAGTGG 3422565 Query 364000 TCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGT--ATGGGGTGACGACTATG 364057 ||||| | ||||| ||| || || |||||| ||||||| | || || | | Sbjct 3422564 ACACTCATGTGCCCTGCCGAGTGCCCCGGTCTTGCCGATGTCCACTCGGAGAAGTTCGAG 3422505 Query 364058 TTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGA 364117 |||| ||||| ||| || || || |||| ||| ||||| ||| || |||| Sbjct 3422504 CAGCTC--TACGAGTCGTACGAGAAGGCTGGCAAGGGTCGAAAGACCATTAAGGCCCAGA 3422447 Query 364118 AGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACA 364177 |||| ||||||||||| | || | || | ||||| || |||| ||| | |||| Sbjct 3422446 AGCTCTGGTTTGCCATTCTTGAGGCTCAAACCGAGACGGGTGGTCCCTTCATGCTCTACA 3422387 Query 364178 AAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACC 364237 | || || ||| |||||| ||||| |||||||| ||||| || | ||| | Sbjct 3422386 AGGACGCGGCGAACGCCAAGTCGAACCAACAGCACCTCGGTACGATCAAATCCTCCAATC 3422327 Query 364238 TATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGT 364297 | |||||||||||||| || ||| | || ||||||||| ||| || || |||||||| | Sbjct 3422326 TCTGTACCGAGATTATCGAGTACTCTGCCCCCGACGAGGTTGCTGTTTGCAACCTTGCCT 3422267 Query 364298 CGATCGCGCTTCCGGCGTTTGTAAA-----AGATGGTACT-TTTGACCACCAGCATCTTT 364351 | |||| || || || || || | ||| | | | | |||| || | || Sbjct 3422266 CCCTCGCCCTCCCCGCATTCGTCGACATGGAGAAGCGAGTCTATGACTTTAAGAAGCTCC 3422207 Query 364352 ATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATC 364411 | || | ||| | | || || || ||| |||| ||| || || || | Sbjct 3422206 ACGAAATCACCAAGGTCGTCACCAAGAACCTTGACCAGGTCATCTCGCGCAACTACTACC 3422147 Query 364412 CAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGG 364471 | | || || || || || |||||||| || || | ||||| ||||| |||| Sbjct 3422146 CTGTCATCGAGGCGCAGAACTCCAACATGCGTCACCGTCCCGTCGGTCTCGGTGTCCAGG 3422087 Query 364472 GCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTC 364531 | || || |||| |||||| ||| ||| | || || || || | ||| || | | Sbjct 3422086 GTCTTGCCGACGCCTTTATGGCGCTTCGCATGCCCTTCGAGTCCCCCGCCGCCCGCGAGC 3422027 Query 364532 TAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGG 364591 | || | ||||||| || || || || |||||| | || ||||| || ||| Sbjct 3422026 TCAACATCCAGATCTTCGAGACCATCTACCATGCCGCCCTCGAGGCGTCGTGCGAGATGG 3421967 Query 364592 CAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCC 364651 | | ||| |||||| || || ||||| ||||| | || ||||| ||| ||| Sbjct 3421966 CTCAGGAGCTGGGTAAGTACGAGACATACGAGGGTTCCCCCATGTCCCAGGGTAAACTCC 3421907 Query 364652 AGTTTGATCTATGGAATGTCACG--CCATCTGTCCGATGGAACTGGGATACGCTACG--- 364706 |||| ||||| ||| ||| | ||| | | || ||| ||||| || || || Sbjct 3421906 AGTTCGATCTCTGG--GGTCGGGTCCCAACCGACCTCTGGGACTGGTCCACCCTCCGAGC 3421849 Query 364707 TTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGC 364766 ||||| ||||| |||| ||| || ||||||||| | || || ||||| || || Sbjct 3421848 TTCCA---TTAAGCAGCACGGTGTCCGAAACTCCCTCCTCGTTGCCCCTATGCCTACCGC 3421792 Query 364767 TTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTA 364826 || ||| | ||||| ||||| |||||||||||||| || | ||| || || || Sbjct 3421791 CTCCACTTCCCAGATTCTCGGCTGGAACGAGTGCTTCGAGCCCTACACATCCATGCTCTA 3421732 Query 364827 TTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCT 364886 | ||||| || ||||| || || || | ||| || | || | || || Sbjct 3421731 CGCTCGCCGAGTGCTTTCTGGCGATTTCCAGGTCGTCTGCCCCTGGCTTCTTCGAGACCT 3421672 Query 364887 TTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTC 364946 | || || || |||| |||| |||||||||| ||||| |||||| ||||| Sbjct 3421671 CATCAACTTGGGTCTCTGGGACGACAACATGAAGAACCTCATCATTGCCGCTGGCGGTTC 3421612 Query 364947 TGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGA 365006 | | || ||||| || | || | || |||||| | || ||||| || || ||||| Sbjct 3421611 TATCCAAAACATCCCCTCTATCCCTGCCGACCTGAAGTCAATCTACAAGACTGTCTGGGA 3421552 Query 365007 AAT 365009 ||| Sbjct 3421551 AAT 3421549 Score = 89.7 bits (98), Expect = 1e-12 Identities = 150/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGA-ACGTTCA--TTCGCG 22488 || ||||| || || || |||||||| || ||||| | | || | || || ||||| Sbjct 11402 ATCAAGAAGAAAGCCGACTGGGCGCTCAAGTGGATCACGGACGACAAGTCCACATTCGCT 11461 Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 || ||||| || || ||||| | || || || || ||||| || || |||| | Sbjct 11462 GAGCGTCTCATCGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGTTCATTCGCCTCC 11521 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 ||||| ||||| || || |||| | ||||| || || || || || || ||| | || Sbjct 11522 ATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACGAGCTCATC 11581 Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 || ||||||||||| || ||||| ||||| || Sbjct 11582 TCTCGTGATGAGGGTCTCCACACCGACTTTGCCTG 11616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353165820332