Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4 102 8e-17 seq2 100 3e-16 seq1 87.8 2e-12 >seq4 Length=1954963 Score = 102 bits (112), Expect = 8e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| ||| || || | || |||||||| || |||||||| || | Sbjct 837948 CCACCACGCAGACGCAACACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAC 837889 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| ||||||||||| ||| | || | |||||||||||| || || Sbjct 837888 AGGGTCCGACCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCTGGGGGA 837829 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| || |||| Sbjct 837828 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGACGATTCGACT 837769 Query 131188 TCGACGGTAACGGTTTTACCGGTTAG 131213 |||| ||| | || || || || || Sbjct 837768 TCGAGGGTGATCGTCTTGCCCGTAAG 837743 >seq2 Length=3428829 Score = 100 bits (110), Expect = 3e-16 Identities = 211/308 (69%), Gaps = 5/308 (2%) Strand=Plus/Plus Query 46099 AAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGT 46158 |||||| ||||||||||| | |||||||||| | || | || ||||| |||||| Sbjct 11408 AAGAAAGCCGACTGGGCGCTCAAGTGGATCACGGACGACAAGTCCACATTCGCTGAGCGT 11467 Query 46159 ATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTT 46218 | | |||||||| || ||||| |||| || || || || ||| ||||||| Sbjct 11468 CTCATCGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGTTCATTCGCCTCCATCTTC 11527 Query 46219 TACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCG 46277 | |||| || | || | |||||||||| || || || ||||||||| || || || Sbjct 11528 TGGCTCAAGAAGCGTGGTC-TCATGCCCGGACTCACCTTCTCCAACGAGCTCATCTCTCG 11586 Query 46278 CGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGACAA 46337 || ||||| || || || |||||||| || ||| || | | | | ||| ||| Sbjct 11587 TGATGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCT-TCTCCCACCTCCGCA-GACGG 11644 Query 46338 GCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTT 46397 | ||| ||||| ||| | | || |||||||||| || |||||| ||||||| Sbjct 11645 CCCTGC-CCCGAGACCATCAACAAGATCATCAAGGAGGCTGTAAAGATTGAGCAGGAGTT 11703 Query 46398 TTTTACGG 46405 || |||| Sbjct 11704 CTTGACGG 11711 >seq1 Length=3588805 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| ||| || || | ||| |||||| || |||||||| |||||| Sbjct 3579500 CCACCACGAAGACGCAACACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 3579559 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | | |||||| |||||||| || || |||| | |||||||||||| || || Sbjct 3579560 AACGTCCTCCCGTCCTCCAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGA 3579619 Query 131128 ATTCCTTC 131135 || || || Sbjct 3579620 ATACCCTC 3579627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012646595840