Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2 132 6e-26 >seq2 Length=3428829 Score = 132 bits (146), Expect = 6e-26 Identities = 180/249 (72%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || || ||| ||| |||||||| || | | || | |||||||| || |||||| Sbjct 11616 CAGGCAAAGTCGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTGAGT 11557 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 |||||||| || |||||||| || ||||| || ||||| || ||||| || || ||||| Sbjct 11556 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAATGAACCCGAGAAGAAG 11497 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT--GT- 32837 || || || || || |||||||| || || | ||| | | || |||| | || Sbjct 11496 ATACCCTCGACGGCGGCAAAGGCGATGAGACGCTCAGCGAATGTGGACTTGTCGTCCGTG 11437 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897 |||||||| | ||||| ||||| ||||| || | || || || ||||| || || | | Sbjct 11436 ATCCACTTGAGCGCCCAGTCGGCTTTCTTCTTGATGCAGGGGATGGTCTCAATGGCGTCA 11377 Query 32898 AAGAGATAG 32906 ||||| ||| Sbjct 11376 AAGAGGTAG 11368 Score = 120 bits (132), Expect = 4e-22 Identities = 450/698 (64%), Gaps = 6/698 (1%) Strand=Plus/Plus Query 63011 ACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC 63070 |||| | | || || || || || | || ||||| | | |||||| ||||| || Sbjct 3422524 ACATCGGCAAGACCGGGGCACTCGGCAGGGCACATGAGTGTCCACTCGCCGTCCGACTCG 3422583 Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63130 || || ||||| ||||| || | ||||| || || || || || | | | Sbjct 3422584 ACCCGCTTCATGAAGAGGTCCGAGATCCAGAGGGCGTAGAAGAGGTCACGTGCACGGACC 3422643 Query 63131 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63190 ||||| || || ||||| || ||||||||| | | || || | ||||| || Sbjct 3422644 TCCTCCTTACCGTGGTTCTTGCGCAGGTCGAGGAACTCGAAGATGTCGGCGTGCCAGGGC 3422703 Query 63191 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 63250 || | ||| ||||| | | || || |||||||| || ||||| || | ||||| || Sbjct 3422704 TCGAGGTAGATGGCAAACGCGCCCGGACGTTTGTTACCGCCCTGGTCGACGTATCGCGCC 3422763 Query 63251 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCA-TTGGTCCCTGA 63309 ||| | | ||| | ||| || | ||||| || || ||||| ||||| || | Sbjct 3422764 GTGGCGTCGAACGCTCGGAGCATGGGTACGATACCGTTCGA-GTACCCGTTGGTACCGGC 3422822 Query 63310 GATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTT 63369 || || ||| |||| || | ||| || || || || || ||||| | || Sbjct 3422823 AATGTAAGATCCCTTGGCGCGGACATTGTGGATGTGGAGTCCGATCCCGCCTGCAGTCTT 3422882 Query 63370 AGAGATTAATGCGCATCGTTTTAACG-TATCATAGATGCCCTCTATACTATCATCCATCA 63428 ||||| ||||| ||| || | | | |||||||| ||||| || || ||| ||| Sbjct 3422883 GGAGATCTGCGCGCA-CGTCTTGAGGGTCTCATAGATACCCTCAATCGAGTCGTCCTTCA 3422941 Query 63429 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 63488 | | || || ||| ||||||||| | || || || || || | ||||| Sbjct 3422942 TCGCCACGAGGAAGCAGGATGACATTTGGGGGTTGGGGGTACCGGCGTTGAAGAGGGTAG 3423001 Query 63489 GAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTA 63548 | |||||||| || || || ||||| | || ||||| |||||||| | ||| | Sbjct 3423002 GGGAAGCGTGGGTGAAGTATCGCTCAGACATGAGGTTGTAGGTCTCAATGACCTTGTCAA 3423061 Query 63549 TATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACG 63607 | | || | || || || || ||||||||||| | ||||||||| || | || ||| Sbjct 3423062 TGTTGGCACCG-TGGATACCGACAGCGACACGCATAATCATGTGCTGGGGACGCTCGACG 3423120 Query 63608 ATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 63667 || || ||| | | | ||||||| || | || || || ||||| |||||| Sbjct 3423121 ATTTTACCGTTGACGCGAAGGAGGTAGGATCGCTCGAGGGTCTTGAACCCAAAGTAGTTG 3423180 Query 63668 TATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63705 || | |||||| || | ||| || || | |||| ||| Sbjct 3423181 TAGGCAAAGTCCCGGTTGTAGATGATGGCAGAGTCGAG 3423218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631794069600