Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq4 105 1e-17 seq2 89.7 1e-12 >seq4 Length=1954963 Score = 105 bits (116), Expect = 1e-17 Identities = 134/182 (74%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || ||||| ||| | || ||||| || | |||| | ||||||| || ||| || || Sbjct 227823 GGTCCCAACGGTTCCGGAAAGTCGACTTTGGTCAAGCTGTTGACTGGAGAAACCGAGCCC 227764 Query 280239 AC--TGAGGGGTCC-GTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCAC 280295 | || | |||| |||||||| || |||||| || || | |||||| ||||||||| Sbjct 227763 AACTTGGGTGGTCAAGTTTGGAAACACCCCAACTTGGTCATTGGTTACGTTGCTCAGCAC 227704 Query 280296 GCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGC 280355 ||||||||||||||||| |||||||| ||| || || | ||||||| |||||| Sbjct 227703 GCTTTCCACCACATCGACAACCACCTCGACTCTACCCCCCTCGAATACATGTTGTGGCGA 227644 Query 280356 TA 280357 || Sbjct 227643 TA 227642 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || |||||||| ||||| |||||||||||||| || ||| | || || || || | Sbjct 228306 GGCTCTCTGTCTGGTGGGTGGAAGATGAAGCTCGCTCTCGCCCGAGCTATCCTCTTCAAG 228247 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 || ||| |||| || || || ||||| ||||||||| ||||| |||||| | |||| Sbjct 228246 GCGGATATCCTCCTCCTCGACGAGCCCACCAACCACTTGGACGTGCTCAACGTTGACTGG 228187 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 | | |||||| ||| || | | | | ||| |||| ||||| |||||||| Sbjct 228186 TTGATCAACTACCTTACCTCCCTAACCACCTGTACCTCCATCATCGTCTCGCACGACTCG 228127 Query 279879 GGCTTCCT 279886 | |||||| Sbjct 228126 GACTTCCT 228119 >seq2 Length=3428829 Score = 89.7 bits (98), Expect = 1e-12 Identities = 199/298 (67%), Gaps = 3/298 (1%) Strand=Plus/Minus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||| |||||||| || ||| ||||| ||||||||| | || || ||||| | || Sbjct 11602 GTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATGAGACC 11543 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963 ||| ||| ||||||||||||| | | || || || ||||| | | ||||||||| Sbjct 11542 ACGCTTCTTGAGCCAGAAGATGGAGGCGAATGAACCCGAGAAGAAGATACCCTCGACGGC 11483 Query 251964 CACCCATGCAACAAGGCGCTCAGCAAA---CGACTTGTCCTGCGACAAGAACTTCTGTGC 252020 | | || | || |||||||| || |||||||| | || | |||| | || Sbjct 11482 GGCAAAGGCGATGAGACGCTCAGCGAATGTGGACTTGTCGTCCGTGATCCACTTGAGCGC 11423 Query 252021 CCATGCTGCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCG 252080 ||| | || ||||| | |||||| || || || || |||||||| || |||| Sbjct 11422 CCAGTCGGCTTTCTTCTTGATGCAGGGGATGGTCTCAATGGCGTCAAAGAGGTAGGTCCG 11363 Query 252081 CTCGGCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 || ||||| |||| | || | ||||| ||||| |||| || |||||| Sbjct 11362 GCGTGCGGGGTCCTTGATGTAGGTGTCGATGAGGAGGGAGTAGGTCTCAGAGTGGATG 11305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836457601866