Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq4 158 2e-33 seq1 150 3e-31 >seq4 Length=1954963 Score = 158 bits (174), Expect = 2e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| |||||||| ||||| ||||| || |||||||| || || || Sbjct 837948 CCACCACGCAGACGCAACACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAC 837889 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || |||| || || || | |||||| |||||||| || || | || ||||| || ||| Sbjct 837888 AGGGTCCGACCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCTGGGGGA 837829 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| |||||||| ||||||||||| | ||||| ||| Sbjct 837828 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGACGATTCGACT 837769 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || | |||||| || || ||||| ||| Sbjct 837768 TCGAGGGTGATCGTCTTGCCCGTAAGG 837742 >seq1 Length=3588805 Score = 150 bits (166), Expect = 3e-31 Identities = 165/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 ||||| || | ||| || || ||||| || ||||| || || ||||| || || | ||| Sbjct 3579788 CGCAAGACGAGGTGCAGTGTTGACTCCTTCTGGATATTGTAGTCGGACAGCGTGCGGCCA 3579847 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| | ||| || ||||| || || | || |||||||| || || || || |||||| Sbjct 3579848 TCTTCGAGCTGTTTGCCGGCAAAGATCAATCGCTGTTGGTCTGGGGGGATACCCTCCTTG 3579907 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGAT 68425 || || ||||| ||||| || ||||||||||| ||| || || || || | ||||| Sbjct 3579908 TCCTGGATCTTCGCCTTTACATTGTCGATGGTGTC-GCTCGACTCAACCTCAAGAGTGAT 3579966 Query 68426 GGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||| || |||||||| ||||| || ||||||||| Sbjct 3579967 GGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCATT 3580003 Score = 132 bits (146), Expect = 9e-26 Identities = 135/176 (77%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || ||||| || || | ||||||||| | |||||| || || || || | || || ||| Sbjct 3580100 TAGTCGGAAAGAGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAATCGCTGCTGG 3580159 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || || || || |||||||| |||||||| |||||||| ||||||||||| | Sbjct 3580160 TCTGGCGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCGGAC 3580219 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || | |||||| || || || || |||||||||||||| |||||||| Sbjct 3580220 GACTCAACCTCAAGGGTGATCGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 3580275 Score = 123 bits (136), Expect = 5e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || || || |||||||| |||||||| || | || || ||||| || ||||| || ||| Sbjct 3580716 CCGTCCTCCAACTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCTGGGGGAATACCCTCC 3580775 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||||||| || |||||||| | || || || || | |||| Sbjct 3580776 TTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTG 3580835 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGAC 68449 |||||||| || |||||||||||||| Sbjct 3580836 ATGGTTTTGCCGGTGAGGGTCTTGAC 3580861 Score = 98.7 bits (108), Expect = 2e-15 Identities = 208/305 (68%), Gaps = 4/305 (1%) Strand=Plus/Plus Query 268489 CTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTC 268548 ||| || || |||| || || || || | ||| || || || | | || || | || Sbjct 59449 CTTAGCGACACCGTAAGGGGATCGGGGGTAGAAAGGGGTGGTCTCCCTCTGGGGAGTCTC 59508 Query 268549 TCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTT-TCGA 268607 |||| || || | ||||| ||||| || || ||||||||| | | || || |||| Sbjct 59509 GAGGACCTTACCGTACAGCTCAGAGGTGGAGGCCTGGTAGAACCT-GACGTGCTTCTCGA 59567 Query 268608 GACCG-CAGATTCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCT 268666 | ||| ||| ||||||| || ||||| | ||| || || || | ||| || || || | Sbjct 59568 GTCCGGCAG-TTCGGATAGCGTCGAGGATACGGAGCGTACCAAGGCCGTCGACATCGCCG 59626 Query 268667 GTATACTCCGGCATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACC 268726 |||||||| | |||||| || || | ||| || ||||||||||||||| || | | Sbjct 59627 GTATACTCGGACATCTCAAAACTGACTTTGACGTGAGACTGGGCGCCCAGGTTGTAGATC 59686 Query 268727 TCATCCGGTTTGACCTGCTGCACGATCTTCACGAGGTTCGTTGAGTCGGTGAGGTCTCCG 268786 ||| || | |||||| | ||| | |||| || || | |||||| | || || Sbjct 59687 TCAGTGGGCTGGACCTGGGAGATGATATATGCGAGATTGGTGGCGTCGGTTAAATCACCA 59746 Query 268787 TAGTG 268791 ||||| Sbjct 59747 TAGTG 59751 Score = 93.3 bits (102), Expect = 8e-14 Identities = 82/100 (82%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 68363 CTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGG 68421 |||||| |||||||| |||||||| || |||||||| |||| | || || || | | Sbjct 3579676 CTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTC-GCTGCTCTCCACCTCAAGAG 3579734 Query 68422 TGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| || ||||||||||||||||||||||| |||||||| Sbjct 3579735 TGATCGTCTTTCCCGTGAGGGTCTTGACGAAAATCTGCAT 3579774 Score = 93.3 bits (102), Expect = 8e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || || || || || | || || || | ||||||||||||||| || | || || ||| Sbjct 3580374 TAGTCCGACAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAAATCAATCGCTGCTGG 3580433 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || ||||| || || ||||| || ||||| |||||||| ||||| ||||| | Sbjct 3580434 TCTGGGGGAATACCCTCTTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCGGAA 3580493 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || || || | ||||| || ||||| |||||| Sbjct 3580494 GACTCGACCTCAAGAGTGATAGTCTTTCCGGTGAGG 3580529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622100472720