Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2 392 6e-104 seq5 95.1 2e-14 >seq2 Length=3428829 Score = 392 bits (434), Expect = 6e-104 Identities = 1163/1773 (66%), Gaps = 59/1773 (3%) Strand=Plus/Plus Query 243884 GACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCCTTCTGA 243943 |||| |||||||| | ||| | || || || ||||||| | |||| |||| ||| Sbjct 3421486 GACTTACTCTGGTCAATGAATGCAGCTCGGTCAGCGGCCAAGTCAATGACTGCCTTTTGA 3421545 Query 243944 --GATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGT 244001 ||| || || || ||||||||||| | ||| |||| | |||| ||||| Sbjct 3421546 CTGATTTCCCAGACA--GTCTTGTAGATTGACTTCAGGTCGGCAGGGATAGAGGGGATGT 3421603 Query 244002 TCTGCACCGAGCC-CTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCC 244060 | || | || || | | || | |||| || | |||||| |||| ||| || ||| Sbjct 3421604 TTTGGATAGAACCGCCAGCGG-CAATGATGAGGTTCTTCATGTTGTCGTCCCAGAGACCC 3421662 Query 244061 AAGCGCTCCAGCGCCTCGA-----CCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACA 244115 ||| || | ||||| ||||| || || ||||| || || || || | Sbjct 3421663 AAGTTGATGAG-GTCTCGAAGAAGCCAGGGGCAG----ACGACCTGGAAATCGCCAGAAA 3421717 Query 244116 GCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTA 244175 |||| ||||| |||||| || || ||||||| || ||| | ||| || | Sbjct 3421718 GCACTCGGCGAGCGTAGAGCATGGATGTGTAGGGCTCGAAGCACTCGTTCCAGCCGAGAA 3421777 Query 244176 TCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCC 244235 |||| | ||| || || ||||| || | || || || ||| | || |||||| Sbjct 3421778 TCTGGGAAGTGGAGGCGGTAGGCATAGGGGCAACGAGGAGGGAGTTTCGGACACCGTGCT 3421837 Query 244236 TCTGGATGCGGAG-TCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTG 244294 || ||| | || || ||| | ||||||||| | | | | || || Sbjct 3421838 GCTTAATG-GAAGCTCGGAGGGTGGACCAGTCCCAGAGGTCGGTTGGGACCC-------- 3421888 Query 244295 AGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGG 244354 | ||||| | || ||||| || |||| | | |||| |||||||| ||| | Sbjct 3421889 -GACCCCAGAGATCGAACTGGAGTTTACCCTGGGACATGGGGGAACCCTCGTATGTCTCG 3421947 Query 244355 TAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTC 244414 || ||| ||| |||| || || | | ||||||||||| | |||||||||| Sbjct 3421948 TACTTACCCAGCTCCTGAGCCATCTCGCACGACGCCTCGAGGGCGGCATGGTAGATGGTC 3422007 Query 244415 TCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATC 244474 ||||||||| |||| | |||||||| | | | |||||| |||| | | | Sbjct 3422008 TCGAAGATCTGGATGTTGAGCTCGCGGGCGGCGGGGGACTCGAAGGGCATGCGAAGCGCC 3422067 Query 244475 ATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAG 244534 || ||| ||||||| || ||||| || |||| |||| ||| | ||| ||| |||||||| Sbjct 3422068 ATAAAGGCGTCGGCAAGACCCTGGACACCGAGACCGACGGGACGGTGACGCATGTTGGAG 3422127 Query 244535 CGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTG 244594 | || ||| || ||||| |||||| ||| |||| || ||||| |||| Sbjct 3422128 TTCTGCGCCTCGATGACAGGGTAGTAGTTGCGCGAGATGACCTGGTCAAGGTTCTTGGTG 3422187 Query 244595 ATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTA--CTCGTAGGGATCCTCGGCGA 244652 | | | || ||| ||| || |||||| || |||| | ||| | Sbjct 3422188 ACGACCTTGGTGATTTCGTGGAGCTTCTTAAAGTCATAGACTCGC-----TTCTCC---A 3422239 Query 244653 TGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCT 244712 || || | || || |||||||| | ||| |||||||| || || ||||| | Sbjct 3422240 TGTCGA------CGAATGCGGGGAGGGCGAGGGAGGCAAGGTTGCAAACAGCAACCTCGT 3422293 Query 244713 CCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGT 244772 | | | | ||||| || ||||||||| ||||| || | | ||||| || || |||| Sbjct 3422294 CGGGGGCAGAGTACTCGATAATCTCGGTACAGAGATTGGAGGATTTGATCGTACCGAGGT 3422353 Query 244773 GCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCT 244832 |||| || || ||||||||||| ||||||||||||||||||||||| || || |||| Sbjct 3422354 GCTGTTGGTTCGACTTGGCGTTCGCCGCGTCCTTGTAGAGCATGAAGGGACCACCCGTCT 3422413 Query 244833 CGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCT 244892 || || || | || | | |||||| | | ||||| | ||| | ||| ||| Sbjct 3422414 CGGTTTGAGCCTCAAGAATGGCAAACCAGAGCTTCTGGGCCTTAATGGTCTTTCGACCCT 3422473 Query 244893 TGCCCTCTGCCTCGTAGCGGGT-GTACAGGGCCTCGAA---CTCGGGGCCCCAGACCTCG 244948 |||| | |||||| || | ||| || |||||| ||| | | ||| ||| Sbjct 3422474 TGCCAGCCTTCTCGTA-CGACTCGTAGAGCTGCTCGAACTTCTCCGAG---TGGACATCG 3422529 Query 244949 TCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTC 245008 | || ||||||||| || ||||||||||| ||||||||||| | || ||||| | Sbjct 3422530 GCAAGACCGGGGCACTCGGCAGGGCACATGAGTGTCCACTCGCCGTCCGACTCGACCCGC 3422589 Query 245009 TGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTG--CTCGT 245066 | |||||||||||| | |||||||||||| | ||||||||| | || | | | ||| | Sbjct 3422590 TTCATGAAGAGGTCCGAGATCCAGAGGGCGTAGAAGAGGTCAC--GTGCACGGACCTCCT 3422647 Query 245067 CCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCA 245126 || || |||||| | ||| || | || || |||| |||| ||||||||||||| | Sbjct 3422648 CCTTACCGTGGTTCTTGCGCAGGTCGAGGAACTCGAAGATGTCGGCGTGCCAGGGCTCGA 3422707 Query 245127 TGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC-CATCCTCTCGAGC 245185 ||||| || | ||||| || || ||||| || |||||||| || ||| || | Sbjct 3422708 GGTAGATGGCAAACGCGCCCGGACGTTTGTTACCGCCCTGGTCGACGTATCGCGCCGTG- 3422766 Query 245186 GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATG 245245 |||| ||| || || | || || || ||||| |||| |||||||| || ||| Sbjct 3422767 GCGTCGAACGCTCGGAGCATGGGTACGATACCGTTCGAGTACCCGTTGGTACCGGCAATG 3422826 Query 245246 TAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAG 245305 || | |||||| | | || ||| |||| | || | ||||| || ||||||| Sbjct 3422827 TAAGATCCCTTGGCGCGGACATTGTGGATGTGGAGTCCGATCCCGCCTGCAGTCTTGGAG 3422886 Query 245306 ATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTG 245365 || | ||||| |||||| ||| || || ||||| || ||| |||||| Sbjct 3422887 ATCTGCGCGCACGTCTTGAGGGTCTCATAGATACCCTCAATCGAGTCGTCCTTCATCGCC 3422946 Query 245366 AGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTG 245425 | || |||||||| |||| ||||| |||||| | | | |||||| || || ||| Sbjct 3422947 ACGAGGAAGCAGGATGACATTTGGGGGTTGGGGGTACCGGCGTTGAAGAGGGTAGGGGAA 3423006 Query 245426 GCGTGGGTAAAGTAGCGGCTC-GAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTT 245484 |||||||| ||||| | |||| || | || ||| |||| | | ||| ||||| Sbjct 3423007 GCGTGGGTGAAGTATC-GCTCAGACATGAGGTTGTAGGTCTCAATGACCTTGTCAATGTT 3423065 Query 245485 GTCGCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCC 245544 | | |||||||| | ||| | ||| | |||||||||| ||||| | | Sbjct 3423066 GGCACCGTGGATACCGACAGCGACACGCATAATCATGTGCTGGGGACGCTCGACGATTTT 3423125 Query 245545 CTCGGGTCCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCC 245604 || | || | |||||| |||||||| ||||||||||||||||| |||| | Sbjct 3423126 ACCGTTGACGCGAAGGAGGTAGGATCGCTCGAGGGTCTTGAACCCAAAGTAGTTGTAGGC 3423185 Query 245605 AAAGTCGGCGTGGTGCCTGACGGCTGCGTCGAG 245637 |||||| || || ||| ||| | |||||| Sbjct 3423186 AAAGTCCCGGTTGTAGATGATGGCAGAGTCGAG 3423218 Score = 230 bits (254), Expect = 4e-55 Identities = 304/416 (73%), Gaps = 7/416 (2%) Strand=Plus/Plus Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTC 42596 || ||| | ||||||||| ||| || || || |||| |||||| ||| |||| Sbjct 11300 GAAAACATCCACTCTGAGACCTACTCCCTCCTCATCGACACCTACATCAAGGACCCCGCA 11359 Query 42597 GAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGAC 42656 || | | || || | ||||| ||||| || ||||||||||||||||| || ||| Sbjct 11360 CGCCGGACCTACCTCTTTGACGCCATTGAGACCATCCCCTGCATCAAGAAGAAAGCCGAC 11419 Query 42657 TGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTT 42716 ||||||||||| |||||| | | | | || |||| ||| | || | |||||| Sbjct 11420 TGGGCGCTCAAGTGGATCACGGACGACAAGTCCACATTCGCTGAGCGTCTCATCGCCTTT 11479 Query 42717 ACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776 ||||||||||||| |||||||||||||| | |||||||||||||||||||||||| || Sbjct 11480 GCCGCCGTCGAGGGTATCTTCTTCTCGGGTTCATTCGCCTCCATCTTCTGGCTCAAGAAG 11539 Query 42777 -AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCT 42835 ||| || |||||||||||||||||||| ||||| |||||| | || ||||| || Sbjct 11540 CGTGGTCTC-ATGCCCGGACTCACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCT 11598 Query 42836 GCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACA-AGCCCTCGAAGG 42894 || | ||||||||||||||||| ||||| ||||||| ||| | ||||| | Sbjct 11599 CCACACCGACTTTGCCTGCCTCCTCTTCTC---CCACCTC-CGCAGACGGCCCTGCCCCG 11654 Query 42895 AGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACG 42950 || || ||||||| |||||| || |||| ||| |||||||| | ||| Sbjct 11655 AGACCATCAACAAGATCATCAAGGAGGCTGTAAAGATTGAGCAGGAGTTCTTGACG 11710 >seq5 Length=1923346 Score = 95.1 bits (104), Expect = 2e-14 Identities = 89/111 (80%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTG 42782 ||||| ||||||||||| ||||| | |||||| ||||||||||| | ||| | | | | Sbjct 661555 GTCGAAGGCATCTTCTTTTCGGGATCTTTCGCCGCCATCTTCTGGTTAAAG-AAACGTGG 661497 Query 42783 TC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGG 42832 || |||||||||| | || ||||||||||| || |||||| | || ||||| Sbjct 661496 TCTGATGCCCGGATTGACATTCTCGAACGAGCTTATCAGCCGAGATGAGGG 661446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338893089760