Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1 107 5e-18 seq4 96.9 8e-15 >seq1 Length=3588805 Score = 107 bits (118), Expect = 5e-18 Identities = 132/179 (74%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 288298 TAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGA 288357 ||||||| || ||||| || ||||| | || || || || ||||||| ||||| || Sbjct 3580100 TAGTCGGAAAGAGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAATCGCTGCTGG 3580159 Query 288358 GAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG 288414 ||||| ||| || || || ||||| || ||||| || || || || || | ||| Sbjct 3580160 ---TCTGGCGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCG 3580216 Query 288415 CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || || || ||||||||||| ||||| || ||||||||||| |||||||| Sbjct 3580217 GACGACTCAACCTCAAGGGTGATCGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 3580275 >seq4 Length=1954963 Score = 96.9 bits (106), Expect = 8e-15 Identities = 126/173 (73%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || || || ||||| || | || || || ||||| Sbjct 837912 TCCTTCTGGATGTTGTAGTCAGACAGGGTCCGACCGTCCTCCAGCTGCTTGCCGGCGAAA 837853 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || |||||| || || || || |||||||| || || || || Sbjct 837852 ATCAGACGCTGCTGG---TCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACA 837796 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 || || || | ||| |||||| |||||||| ||||||||||| || || || Sbjct 837795 TTGTCGATGGTGTCGGACGATTCGACTTCGAGGGTGATCGTCTTGCCCGTAAG 837743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179654007027628