Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1 125 7e-24 seq4 87.8 2e-12 >seq1 Length=3588805 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | ||| ||||| || | || | |||||||||| || || ||||||||| | Sbjct 3579776 CCACCCCTCAATCGCAAGACGAGGTGCAGTGTTGACTCCTTCTGGATATTGTAGTCGGAC 3579835 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || ||||| ||||| |||| | |||| | ||||||||||| || || Sbjct 3579836 AGCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAATCGCTGTTGGTCTGGGGGG 3579895 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| || |||| |||| || | ||||||| ||||||| || Sbjct 3579896 ATACCCTCCTTGTCCTGGATCTTCGCCTTTACATTG-TCGATGGTGTCGCTCGACTCAAC 3579954 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||| ||||| || ||||| ||||| |||||||| Sbjct 3579955 CTCAAGAGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 3580002 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || || || | | | |||||| || ||||||||||||||| Sbjct 3579500 CCACCACGAAGACGCAACACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 3579559 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | | |||||| || || || |||| | |||| |||||||| ||||| || || Sbjct 3579560 AACGTCCTCCCGTCCTCCAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGA 3579619 Query 138508 ATACCTTC 138515 ||||| || Sbjct 3579620 ATACCCTC 3579627 >seq4 Length=1954963 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||||| || || || | | |||||||| || ||||||||||| | Sbjct 837948 CCACCACGCAGACGCAACACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAC 837889 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || |||| | || |||||||| ||||| || || Sbjct 837888 AGGGTCCGACCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCTGGGGGA 837829 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| || || | |||| || | |||||||| ||| || || Sbjct 837828 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTG-TCGATGGTGTCGGACGATTCGAC 837770 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAG 138593 |||| || | ||| || || || || Sbjct 837769 TTCGAGGGTGATCGTCTTGCCCGTAAG 837743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262238714720