Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2 268 1e-66 seq1 125 9e-24 >seq2 Length=3428829 Score = 268 bits (296), Expect = 1e-66 Identities = 894/1383 (65%), Gaps = 35/1383 (3%) Strand=Plus/Plus Query 115915 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 115974 ||||| ||||| |||||||| || || | || |||| |||||||| || ||||| Sbjct 3421744 GTGTAGGGCTCGAAGCACTCGTTCCAGCCGAGAATCTGGGAAGTGGAGGCGGTAGGCATA 3421803 Query 115975 GGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCC 116034 || || | ||| ||| ||| |||| ||| | | ||||| | ||||| | | Sbjct 3421804 GGGGCAACGAGGAGGGAGTTTCGGACACCGTGCTGCTTAATGGAAGCTCGGAGGGTGGAC 3421863 Query 116035 CAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGAC 116094 ||||| || | ||| ||| |||| | ||| |||||||| |||| |||||| Sbjct 3421864 CAGTCCCAGAGGTCGGTTGGGACCCGACCCCAGAGATCGAACTGGAGTTTACCCTGGGAC 3421923 Query 116095 GCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCC 116154 || || ||||| ||||||| || ||| ||| |||| ||| | |||| Sbjct 3421924 ATGGGGGAACCCTCGTATGTCTCGTACTTACCCAGCTCCTGAGCCATCTCGCACGACGCC 3421983 Query 116155 TCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCG 116214 |||||||| || || || || ||||| || || | || | | ||| || | Sbjct 3421984 TCGAGGGCGGCATGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTCGCGGGCGGCGGGG 3422043 Query 116215 GAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCA 116274 || || || | | || | ||||| | || || ||||| ||||||||||| || Sbjct 3422044 GACTCGAAGGGCATGCGAAGCGCCATAAAGGCGTCGGCAAGACCCTGGACACCGAGACCG 3422103 Query 116275 ATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACG---GGATAAAAATTCCTA 116331 | || || || | ||| || || || | || ||| | | || || | || | Sbjct 3422104 ACGGGACGGTGACGCATGTTGGAGTTCTGCGC---CTCGATGACAGGGTAGTAGTTGCGC 3422160 Query 116332 TCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAA 116391 ||| ||| | || || |||||||| ||||| |||||||| || ||||| | | Sbjct 3422161 GAGATGACCTGGTCAAGGTTCTTGGTGACGACCTTGGTGATTTCGTGGAGCTTCTTAAAG 3422220 Query 116392 TCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACA 116450 ||| | ||| || |||| | ||| | || ||||||| || || || || || Sbjct 3422221 TCATAGACT-CGCTTCTCCATGTCGACGAATGCGGGGAGGGCGAGGGAGGCAAGGTTGCA 3422279 Query 116451 CACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTT 116510 |||| ||| || ||| |||||| ||||| || ||||| | ||| || || Sbjct 3422280 AACAGCAACCTCGTCGGGGGCAGAGTACTCGATAATCTCGGTACAGAGATTGGAGGATTT 3422339 Query 116511 AATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATA 116570 || || || | || || ||| || ||||| | ||| ||| |||||||||||||| | Sbjct 3422340 GATCGTACCGAGGTGCTGTTGGTTCGACTTGGCGTTCGCCGCGTCCTTGTAGAGCATGAA 3422399 Query 116571 TGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCA 116629 || |||||||| ||||| | || ||||| || ||| | | || | | || Sbjct 3422400 GGGACCACCCGTCTCGGTTTGAGCCTCAAGAATGGCAAACCAGAGCTTCTGGGCCTT--- 3422456 Query 116630 CAGTGGCGTTGGCTCGCCCCT------CCTCCTCGTACTTTGTGTAGAGGGCCTCAAACT 116683 | ||| || ||| |||| ||| ||||||| |||||| ||| |||| Sbjct 3422457 -AATGGTCTT---TCGACCCTTGCCAGCCTTCTCGTACGACTCGTAGAGCTGCTCGAACT 3422512 Query 116684 CTTCACCCACAG--CCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTG 116741 || || | | | || | || || || || | || || | ||| | ||| | Sbjct 3422513 --TCTCCGAGTGGACATCGGCAAGACCGGGGCACTCGGCAGGGCACATGAGTGTCCACTC 3422570 Query 116742 ACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATC 116801 || || ||| |||||||||||||||||||| | ||||||||| || ||||||| || Sbjct 3422571 GCCGTCCGACTCGACCCGCTTCATGAAGAGGTCCGAGATCCAGAGGGCGTAGAAGAGGTC 3422630 Query 116802 CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATC 116861 || || | || || | || || || |||| || | || || | ||| || Sbjct 3422631 ACGTGCACGGACCTCCTCCTTACCGTGGTTCTTGCGCAGGTCGAGGAACTCGAAGATGTC 3422690 Query 116862 CGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACG------ACCAGCCTG 116915 |||||||| || || ||||| | || | | ||| |||| ||| |||| Sbjct 3422691 GGCGTGCCAGGGCTCGAGGTAGATGGCAAACGCGCCCG---GACGTTTGTTACCGCCCTG 3422747 Query 116916 GTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTG 116975 || || || | |||||| |||| || | || ||||| || | |||||| | || | Sbjct 3422748 GTCGACGTATCGCGCCGTGGCGTCGAACGCTCGGAGCATGGGTACGATACCGTTCGAGTA 3422807 Query 116976 GCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAAT 117035 || || || || ||| ||| ||||| | ||||| ||||||||| | || || Sbjct 3422808 CCCGTTGGTACCGGCAATGTAAGATCCCTTGGCGCGGACATTGTGGATGTGGAGTCCGAT 3422867 Query 117036 ACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGAT 117095 || ||||| ||| ||||| || |||||| | |||| | | ||||| || || || Sbjct 3422868 CCCGCCTGCAGTCTTGGAGATCTGCGCGCACGTCTTGAGGGTCTCATAGATACCCTCAAT 3422927 Query 117096 CGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGC 117155 |||||| |||| | || | |||||||||| |||||||| || | || ||||| || Sbjct 3422928 CGAGTCGTCCTTCATCGCCACGAGGAAGCAGGATGACATTTGGGGGTTGGGGGTACCGGC 3422987 Query 117156 GTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTC 117215 |||||||||||| || | |||||| |||| | | ||||| | ||||||||| Sbjct 3422988 GTTGAAGAGGGTAGGGGAAGCGTGGGTGAAGTATCGCTCAGACATGAGGTTGTAGGTCTC 3423047 Query 117216 CAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTG 117275 | ||| | ||||| | ||||| ||||||| | ||| ||||||| ||||| || Sbjct 3423048 AATGACCTTGTCAATGTTGGCACCGTGGATACCGACAGCGACACGCATAATCATGTGCTG 3423107 Query 117276 GGG 117278 ||| Sbjct 3423108 GGG 3423110 Score = 132 bits (146), Expect = 6e-26 Identities = 177/245 (72%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || |||||||||||| ||||| |||||||| || || |||||| || || Sbjct 11613 GCAAAGTCGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTGAGTCCG 11554 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | |||||| || | ||||| || ||||||||||| Sbjct 11553 GGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAATGAACCCGAGAAGAAGATA 11494 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATC---A 127696 ||||| || || || || | |||||||| || || | |||||| || Sbjct 11493 CCCTCGACGGCGGCAAAGGCGATGAGACGCTCAGCGAATG---TGGACTTGTCGTCCGTG 11437 Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCA 127756 | |||||| | |||||| | || || |||| ||| || |||| ||||| || || ||| Sbjct 11436 ATCCACTTGAGCGCCCAGTCGGCTTTCTTCTTGATGCAGGGGATGGTCTCAATGGCGTCA 11377 Query 127757 AAGAG 127761 ||||| Sbjct 11376 AAGAG 11372 >seq1 Length=3588805 Score = 125 bits (138), Expect = 9e-24 Identities = 201/286 (70%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 10564 AATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTCAACCACGAGTCA 10623 |||||||||||| |||| || | | | || ||||||||| |||||||||||||| Sbjct 59380 AATTATCGCGAAGCCTACGGGATGTACGCTTGTAACGGTATTCTATTCAACCACGAGTCT 59321 Query 10624 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAATCG-T 10682 ||||||||||| | | |||||| || |||||| || || || | ||| | Sbjct 59320 CCCCGTCGTGGGCGGACTTTCGTCACGCGCAAGATCTCCCGTGCCGTCGCCGAGATCCAT 59261 Query 10683 GGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGACA 10742 |||| || | | || | | || ||||| ||||| || | ||||||||||| Sbjct 59260 CTCGGGCTCTCGG-ACTGTATCTACCTTGGTAACCTGGACGCCAAGCGAGACTGGGGACA 59202 Query 10743 CGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTCCAACAAGAAGAGGCGGACGAATA 10802 ||||| ||||| | || | |||||||| | || ||||| || |||||||| || | Sbjct 59201 TGCCAACGACTACATCGAGGGTATGTGGCTTATGCTGCAACAGGACGAGGCGGATGATTT 59142 Query 10803 TGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAG 10848 ||| | ||| |||| ||||| ||| |||| | |||||||||||| Sbjct 59141 TGTTCTGGCGTCGGGCGAGACTCACCCCGTTCGAGAGTTCGTTGAG 59096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507000610160