Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1 168 8e-37 seq4 127 2e-24 seq3 86.0 7e-12 >seq1 Length=3588805 Score = 168 bits (186), Expect = 8e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || || ||||| || || |||| ||| |||||| ||||||||||||||||| Sbjct 3579776 CCACCCCTCAATCGCAAGACGAGGTGCAGTGTTGACTCCTTCTGGATATTGTAGTCGGAC 3579835 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || |||||||| |||||||| || ||||| ||||| ||||| | || Sbjct 3579836 AGCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAATCGCTGTTGGTCTGGGGGG 3579895 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||||| ||||||| ||| | | | | ||||||||||| || || Sbjct 3579896 ATACCCTCCTTGTCCTGGATCTTCGCCTTTACATTGTCGATGGTGTCGCTCGACTCAACC 3579955 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | |||||||||||||| || || ||||| |||||||| |||||| Sbjct 3579956 TCAAGAGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCATT 3580003 Score = 114 bits (126), Expect = 1e-20 Identities = 132/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 46416 TGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCT 46475 |||||||||| ||||||||| | || || |||||||| || || || ||||| ||||||| Sbjct 3580098 TGTAGTCGGAAAGAGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAATCGCTGCT 3580157 Query 46476 GGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGC 46535 |||| | ||| | | |||||||||| |||||| ||||| | | | |||||| Sbjct 3580158 GGTCTGGCGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCGG 3580217 Query 46536 TCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || || | ||||| || ||||| || || || || || ||||| ||||| Sbjct 3580218 ACGACTCAACCTCAAGGGTGATCGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 3580275 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/167 (73%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 46416 TGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCT 46475 ||||||| || | || || |||| || | ||||||||||||||| ||||| ||||||| Sbjct 3580696 TGTAGTCAGACAAGGTTCGGCCGTCCTCCAACTGCTTGCCGGCGAAAATCAATCGCTGCT 3580755 Query 46476 GGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCG 46534 |||| | || | | |||||||||| |||||| ||||| ||| | | | ||||| Sbjct 3580756 GGTCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCC 3580814 Query 46535 CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 || || || || | |||||||||||||| || || || || || Sbjct 3580815 GAGGACTCAACCTCGAGGGTGATGGTTTTGCCGGTGAGGGTCTTGAC 3580861 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 46416 TGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCT 46475 ||||||| || || ||||| |||| ||||||||||| |||||||| ||||| ||||||| Sbjct 3580372 TGTAGTCCGACAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAAATCAATCGCTGCT 3580431 Query 46476 GGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGC 46535 |||| | || | | ||| |||||| |||||| ||||| | | | ||||||| Sbjct 3580432 GGTCTGGGGGAATACCCTCTTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCGG 3580491 Query 46536 TCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572 || || || || | ||||| || || || || || Sbjct 3580492 AAGACTCGACCTCAAGAGTGATAGTCTTTCCGGTGAG 3580528 >seq4 Length=1954963 Score = 127 bits (140), Expect = 2e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| || | ||| |||||| ||||| |||||||| || || || || | Sbjct 837937 ACGCAACACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTCCGACC 837878 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||||||||||||||| |||| ||||||||||| | || | | |||||| Sbjct 837877 GTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCTGGGGGAATACCCTCCTT 837818 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||||| | | | |||||| |||||| || || | ||||| Sbjct 837817 GTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGACGATTCGACTTCGAGGGTGAT 837758 Query 46558 GGTTTTGCCCGTCAG 46572 || |||||||| || Sbjct 837757 CGTCTTGCCCGTAAG 837743 >seq3 Length=2003673 Score = 86.0 bits (94), Expect = 7e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 46416 TGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCT 46475 |||||||| | ||| || |||| || | |||||| |||||||| ||||| ||||||| Sbjct 927257 TGTAGTCGCTCAAAGTTCGGCCGTCCTCCAACTGCTTTCCGGCGAAAATCAATCGCTGCT 927316 Query 46476 GGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGC 46535 |||| | || | | |||||||||| |||||| ||||| | | | |||||| Sbjct 927317 GGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCCG 927376 Query 46536 TCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572 || || || || | |||||||| |||||||| || Sbjct 927377 AGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTAAG 927413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238216297520