Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4 132 5e-26 seq2 132 5e-26 seq1 123 2e-23 seq5 95.1 1e-14 >seq4 Length=1954963 Score = 132 bits (146), Expect = 5e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAA 38324 || |||||||| || |||||| |||| ||||| | |||||| | | | | | || Sbjct 837743 CTTACGGGCAAGACGATCACCCTCGAAGTCGAATCGTCCGACACCATCGACAATGTCAAG 837802 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 | || |||| ||||| ||||| |||||| | ||||| ||||| || |||| ||| ||| Sbjct 837803 GCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGTCTGATTTTCGCCGGC 837862 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 || |||||||| |||| || ||||| |||||||||||||| ||||| | ||||| Sbjct 837863 AAGCAGCTGGAGGACGGTCGGACCCTGTCTGACTACAACATCCAGAAGGAGTCTACGCTC 837922 Query 38445 CATTTGGTGCTGCGTTTGAGAGGCGG 38470 || |||||| ||||| || | || || Sbjct 837923 CACTTGGTGTTGCGTCTGCGTGGTGG 837948 >seq2 Length=3428829 Score = 132 bits (146), Expect = 5e-26 Identities = 227/324 (70%), Gaps = 4/324 (1%) Strand=Plus/Minus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| ||||||||| || | ||||| || | || ||||| |||||| ||| || | Sbjct 11617 GCAGGCAAAGTCGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTGAG 11558 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 ||||||||||| || || || |||||||| || |||| |||||| ||||| ||||| Sbjct 11557 TCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAATGAACCCGAGAAGAA 11498 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 || ||||||||||| || || || | || ||||| |||| |||| | | | | Sbjct 11497 GATACCCTCGACGGCGGCAAAGGCGATGAGACGCTCAGCGAATGTGGACTTGTCGTCCGT 11438 Query 133074 GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTT 133133 |||||| |||||||| ||||| || | |||| ||| || || || || ||||||| Sbjct 11437 GATCCACTTGAGCGCCCAGTCGGCTTTCTTCTTGATGCAGGGGATGGTCTCAATGGCGT- 11379 Query 133134 CAACAAACGGAGTTTCT-CTTCCGAGGAACGC-ACGTAGGTGTCGATGAGGGTCGAATAC 133191 ||| | | | || | | | | || || | | |||||||||||||||| || || Sbjct 11378 CAA-AGAGGTAGGTCCGGCGTGCGGGGTCCTTGATGTAGGTGTCGATGAGGAGGGAGTAG 11320 Query 133192 ATTTCCGAGTGTACGTTCTCCATG 133215 | || ||||| | ||| ||| || Sbjct 11319 GTCTCAGAGTGGATGTTTTCCCTG 11296 >seq1 Length=3588805 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || ||||| ||||| |||||||||||||| | || || ||| | | Sbjct 3580003 AATGCAGATCTTTGTCAAAACCCTCACTGGCAAAACCATCACTCTTGAGGTTGAGTCGAG 3579944 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | | | | | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 3579943 CGACACCATCGACAATGTAAAGGCGAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCA 3579884 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | || | || ||||||||||| || || | ||||| || ||||||||| Sbjct 3579883 ACAGCGATTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGCTGTCCGACTACAA 3579824 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || ||||| | || |||| ||||| || || Sbjct 3579823 TATCCAGAAGGAGTCAACACTGCACCTCGTCTTGCGATTGAGGGGTGG 3579776 Score = 96.9 bits (106), Expect = 3e-15 Identities = 123/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 38256 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGC-GTGCA 38314 || || || ||||| ||||||||||||||| |||| || ||| || | |||| | || Sbjct 3580861 GTCAAGACCCTCACCGGCAAAACCATCACCCTCGAGGTTGAGTCCTCGGACACCATTGAC 3580802 Query 38315 AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCAT 38374 |||| | || | || |||| ||||| ||||| |||||| | ||||| ||||| | || Sbjct 3580801 AACG-TCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGATTGAT 3580743 Query 38375 TTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 || ||| ||||| ||| |||| |||| || ||| | ||||||| Sbjct 3580742 TTTCGCCGGCAAGCAGTTGGAGGACGGCCGAACCTTGTCTGACTACA 3580696 Score = 89.7 bits (98), Expect = 5e-13 Identities = 92/118 (78%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 38343 GAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAG 38402 ||||| |||||| | ||||| ||||| || || | || || || |||||||| |||| | Sbjct 3579627 GAGGGTATTCCCCCAGACCAGCAGCGTCTTATCTTTGCCGGAAAGCAGCTGGAGGACGGG 3579568 Query 38403 CGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGT 38459 | || | | ||||||||||||||| ||||| ||| || ||||| |||||| ||||| Sbjct 3579567 AGGACGTTGAGCGACTACAACATCCAGAAGGAGAGC-ACCCTGCACTTGGTGTTGCGT 3579511 >seq5 Length=1923346 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 132931 ATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATG 132990 || || ||||| ||| ||||| |||||||| || || ||||| || | ||| || ||| Sbjct 661461 ATAAGCTCGTTCGAGAATGTCAATCCGGGCATCAGACCACGTTTCTTTAACCAGAAGATG 661520 Query 132991 GCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCG 133050 ||||||||| ||||||||||||| ||| ||||| ||| ||||| || ||||| | Sbjct 661521 GCGGCGAAAGATCCCGAAAAGAAGATGCCTTCGACACACGCAAAAGCGACAAGGCGTACT 661580 Query 133051 CCGAACG 133057 | ||||| Sbjct 661581 CGGAACG 661587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172637443840