Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 199 5e-46 seq3 86.0 8e-12 seq5 82.4 9e-11 >seq2 Length=3428829 Score = 199 bits (220), Expect = 5e-46 Identities = 723/1117 (65%), Gaps = 37/1117 (3%) Strand=Plus/Minus Query 111546 TATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTTGATG 111605 || ||||| |||||||||||||| | |||||||| | | | ||| | | Sbjct 3423176 TACTTTGGGTTCAAGACCCTCGAGCGATCCTACCTCCTTCGCGTCAACGGTAAAATCGTC 3423117 Query 111606 GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGAT 111665 || || ||| ||||| | ||||| ||||| |||||||||| || | | ||||| Sbjct 3423116 GAGCGTCCCCAGCACATGATTATGCGTGTCGCTGTCGGTATCCACGGTGCCAACATTGAC 3423057 Query 111666 TCTGTTTTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAAC 111724 || | ||||| ||| || ||||| | | || |||| |||||| | || || Sbjct 3423056 AAGGTCATTGAGACCTACAACCTCATGTCTGAGCGATAC-TTCACCCACGCTTCCCCTAC 3422998 Query 111725 CCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAA 111784 |||||||||||| ||||| || | ||||||||||| || ||||| | || | || Sbjct 3422997 CCTCTTCAACGCCGGTACCCCCAACCCCCAAATGTCATCCTGCTTCCTCGTGGCGATGAA 3422938 Query 111785 GGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTG 111844 ||| || || || | || || || | || |||| || || || ||||| ||| Sbjct 3422937 GGACGACTCGATTGAGGGTATCTATGAGACCCTCAAGACGTGCGCGCAGATCTCCAAGAC 3422878 Query 111845 GGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGG 111904 || || || ||||| | |||||||| ||||| | ||||| ||| ||| || Sbjct 3422877 TGCAGGCGGGATCGGACTCCACATCCACAATGTCCGCGCCAAGGGATCTTACATTGCCGG 3422818 Query 111905 TACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 111964 ||| || || | || | ||||| | || ||||| || | || ||||||| ||||| Sbjct 3422817 TACCAACGGGTACTCGAACGGTATCGTACCCATGCTCCGAGCGTTCGACGCCACGGCGCG 3422758 Query 111965 CTATGTAAACCAAGCTGGGCG-TCGCAA------GGGATCTATCGCAGTCTATCTTGAGC 112017 || || |||| ||||| | ||| ||| | | || |||| || |||| Sbjct 3422757 ATACGTCGACCA----GGGCGGTAACAAACGTCCGGGCGCGTTTGCCATCTACCTCGAGC 3422702 Query 112018 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG 112077 | |||||||| || ||| | |||||||| || |||| ||||| ||| | ||||||| Sbjct 3422701 CCTGGCACGCCGACATCTTCGAGTTCCTCGACCTGCGCAAGAACCACGGTAAGGAGGAGG 3422642 Query 112078 CGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTT 112136 || ||| || || ||||||| ||| |||||||| | || |||||||||||| | || Sbjct 3422641 TCCG-TGCACGTGACCTCTTCTACGCCCTCTGGATCTCGGACCTCTTCATGAAGCGGGTC 3422583 Query 112137 GAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCC 112196 ||| | ||| | ||| | ||| | || || | | || |||||||| |||||| | Sbjct 3422582 GAGTCGGACGGCGAGTGGACACTCATGTGCCCTGCCGAGTGCCCCGGTCTTGCCGATGTC 3422523 Query 112197 GTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTG-C 112255 ||| |||| || |||||| ||||||| ||| | ||| | | | Sbjct 3422522 CACTCGGAGAAGTTCGAGCAGCTCTACGAGTCGTACGAG-----AAGGCTGGCAAGGGTC 3422468 Query 112256 GACGGTGC---CAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 112311 || | | || | || | | ||| || ||||| || ||||||||||||| | Sbjct 3422467 GAAAGACCATTAAGGCCCAGAAGCTCTGGTTTGCCATTCTTGAGGCTCAAACCGAGACGG 3422408 Query 112312 GTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 112371 || || | ||||| ||||| ||||| ||| ||| || ||| || | | | Sbjct 3422407 GTGGTCCCTTCATGCTCTACAAGGACGCGGCGAACGCCAAGTCGAACCAACAGCACCTCG 3422348 Query 112372 GTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGA 112431 || |||||| ||||| |||||||| || || | || | | | | || ||| Sbjct 3422347 GTACGATCAAATCCTCCAATCTCTGTACCGAGATTATCGAGTACTCTGCCCCCGACGAGG 3422288 Query 112432 CGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAA--- 112488 ||||| || ||||| || || |||| |||||| | || || || || || Sbjct 3422287 TTGCTGTTTGCAACCTTGCCTCCCTCGCCCTCCCCGCATTCGTCGA--CATGGAGAAGCG 3422230 Query 112489 AGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACA 112548 || | | ||| | | | || ||||||||| | || || ||||| || ||||| || Sbjct 3422229 AGTC-TATGACTTTAAGAAGCTCCACGAAATCACCAAGGTCGTCACCAAGAACCTTGACC 3422171 Query 112549 GAGTTATTGATAGAAATTTTTACCC---CGTTGAGACTGCTCGTAAATCTAATATGAGAC 112605 || || | || | ||||| | | ||| || | || || || ||| | | Sbjct 3422170 AGGTCATCTCGCGCAACTACTACCCTGTCATCGAG---GCGCAGAACTCCAACATGCGTC 3422114 Query 112606 ACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGA 112642 ||||||| | |||||||||||||| ||||| || || Sbjct 3422113 ACCGTCCCGTCGGTCTCGGTGTCCAGGGTCTTGCCGA 3422077 Score = 159 bits (176), Expect = 4e-34 Identities = 183/245 (75%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 102090 CTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 102149 |||||||| ||||| | || | || || || | |||||||| || ||||| | ||| Sbjct 11372 CTCTTTGACGCCATTGAGACCATCCCCTGCATCAAGAAGAAAGCCGACTGGGCGCTCAAG 11431 Query 102150 TGGTTT---GATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTT 102206 ||| | || ||||| | || |||||||| ||| |||| ||||| || Sbjct 11432 TGGATCACGGACGACAAGTCCA---CATTCGCTGAGCGTCTCATCGCCTTTGCCGCCGTC 11488 Query 102207 GAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTC 102266 ||||||||||||||||| ||||| ||| | | || | |||||||||||||| |||||| Sbjct 11489 GAGGGTATCTTCTTCTCGGGTTCATTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTC 11548 Query 102267 ATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAG 102326 ||||| || ||| ||||||||||||||| ||||||||||| ||||| |||||| || Sbjct 11549 ATGCCCGGACTCACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTCCACACCGAC 11608 Query 102327 TTTGC 102331 ||||| Sbjct 11609 TTTGC 11613 >seq3 Length=2003673 Score = 86.0 bits (94), Expect = 8e-12 Identities = 201/301 (67%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 176036 AGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTGTTTGAACCCATGTAG 176095 ||||| ||||| || |||||| || ||| || ||||| ||||| || | |||| Sbjct 810370 AGACGGGTACCGAATTGACCATTAGGAGAAAGCAGGTTGATGTTGTTGCTTCCGACGTAG 810429 Query 176096 TCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCGTGGTGGTACGCACTC 176155 | | ||| | |||||| ||| | ||| |||| ||| |||||||||||||| || Sbjct 810430 TTTTGCGCAAGACCGACAATAGTGGTGGTGAGGGAGATTTCGCCGTGGTGGTACGCCGTC 810489 Query 176156 TTCTCTGCGACAAATGCCG-CCAACTGCGCCACTTTCATCTCATCCTTGAGATTCTTGTG 176214 || || | || | |||| ||| |||||| || || ||||| | || || || | Sbjct 810490 TTTTCCGAAACGTA-GCCGACCAGCTGCGCAACCTTGATCTCCTTCTGCAGGTTTCGTTT 810548 Query 176215 GAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATCCGCCATGTGTGCGAT 176274 |||||| |||| | || || || || || |||||||| ||||||| | ||| Sbjct 810549 GAAACAACCGTAAAGCACTTTACGCTGGCCGGGTTTGAGACCGTCCGCCACCGAAGGGAT 810608 Query 176275 AGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAGGTCCTTGTGTACAAAGTTTGAGAT 176334 || || | || |||| |||| || ||| ||||||| ||||| | ||||| Sbjct 810609 TGATCGGATGTTATCGGCCATGGAGAAGAGGATGAGCTCCTTGTTGACAAAATCGGAGAT 810668 Query 176335 G 176335 | Sbjct 810669 G 810669 >seq5 Length=1923346 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 102190 TCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGC 102249 |||| ||||||||||| || || |||||||| || || || ||| ||| || | ||| Sbjct 661569 TCGCTTTTGCGTGTGTCGAAGGCATCTTCTTTTCGGGATCTTTCGCCGCCATCTTCTGGT 661510 Query 102250 TCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACG 102309 | ||||| || ||||| ||||| || | ||||| |||||||||||| || || | Sbjct 661509 TAAAGAAACGTGGTCTGATGCCCGGATTGACATTCTCGAACGAGCTTATCAGCCGAGATG 661450 Query 102310 AGGGA 102314 ||||| Sbjct 661449 AGGGA 661445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742198258720