Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2 188 8e-43 seq11 89.7 6e-13 >seq2 Length=3428829 Score = 188 bits (208), Expect = 8e-43 Identities = 971/1534 (63%), Gaps = 31/1534 (2%) Strand=Plus/Plus Query 109507 GACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGG 109566 |||| | ||| || |||||| | | || ||||| |||| ||| |||| |||||| Sbjct 3421486 GACTTACTCTGGTCAATGAATGCAGCTCGGTCAGCGGCCAAGTCAATGACTGCCTTTTGA 3421545 Query 109567 CTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTT 109626 || |||||||||||||||||||| | ||| | || | || || ||||||| Sbjct 3421546 CTGATTTCCCAGACAGTCTTGTAGATTGACTTCAGGTCGGCAGGGATAGAGGGGATGTTT 3421605 Query 109627 TGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACC-AGAGACCGAC 109685 || ||||| || ||||| | ||||| | |||||| | | ||| || ||||||| | Sbjct 3421606 TGGATAGAACCGCCAGCGGCAATGATGAGGTTCTTCATGT-TGTCGTCCCAGAGACCCAA 3421664 Query 109686 CTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACA---AATTCACCAGCAAGTGT 109742 || |||| || || | ||| || | | ||||| || || |||| ||| Sbjct 3421665 GTTGATGAGGTC-TCGA--AGAAGCCAGGGGCAGACGACCTGGAAATCGCCAGAAAGCAC 3421721 Query 109743 GCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTG 109802 || || ||||| | | |||||||| ||||| ||||| || ||| || || || Sbjct 3421722 TCGGCGAGCGTAGAGCATGGATGTGTAGGGCTCGAAGCACTCGTTCCAGCCGAGAATCTG 3421781 Query 109803 TGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTT 109862 | |||||| || || ||||| || || | ||| || |||||||| ||| | | ||| Sbjct 3421782 GGAAGTGGAGGCGGTAGGCATAGGGGCAACGAGGAGGGAGTTTCGGACACCGTGCTGCTT 3421841 Query 109863 TACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCA 109922 | | || | | | ||| || | | | | | | | | |||| Sbjct 3421842 AATGGAAGCTCGGAGGGTGGACCAGTCCCAGAGGTCGGTT------GGGACCCGACCCCA 3421895 Query 109923 CATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCC 109982 | ||| || ||| ||||| | || ||||||| | | |||||||| || Sbjct 3421896 GAGATCGAACTGGAGTTTACCCTGGGACATGGGGGAACCCTCGTATGTCTCGTACTTACC 3421955 Query 109983 CTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAAT 110042 | ||| |||| |||| | || ||||| || || ||||| || || ||||| || || Sbjct 3421956 CAGCTCCTGAGCCATCTCGCACGACGCCTCGAGGGCGGCATGGTAGATGGTCTCGAAGAT 3422015 Query 110043 ATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACAC 110102 || || | ||| | | | |||||||| | | | ||||| | Sbjct 3422016 CTGGATGTTGAGCTCGCGGGCGGCGGGGGACTCGAAGGGCATGCGAAGCGCCATAAAGGC 3422075 Query 110103 ATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGC 110162 || || |||||||| ||||||||||| | ||| || || |||||| ||| | || Sbjct 3422076 GTCGGCAAGACCCTGGACACCGAGACCGACGGGACGGTGACGCATGTTGGAGTTCTGCGC 3422135 Query 110163 AGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTT 110222 || ||||| ||||||| ||||||| | | || ||||| || || ||| Sbjct 3422136 CTCGATGACAGGGTAGTAGTTGCGCGAGATGACCTGGTCAAGGTTCTTGGTGACGACCTT 3422195 Query 110223 CGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGG 110282 |||||||| ||||| || | | || | | | ||||| | | ||| || ||| Sbjct 3422196 GGTGATTTCGTGGAGCTTCTTAAAGTCATAGACTCGCTTCTCCATGTCGACGAATGCGGG 3422255 Query 110283 GAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAAT 110342 ||| || | || ||||| ||||| |||| | |||||| | | | ||| || | ||| Sbjct 3422256 GAGGGCGAGGGAGGCAAGGTTGCAAACAGCAACCTCGTCGGGGGCAGAGTACTCGATAAT 3422315 Query 110343 TTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTT 110402 || ||||| | ||||| || || ||| | || || || ||||| |||| ||| Sbjct 3422316 CTCGGTACAGAGATTGGAGGATTTGATCGTACCGAGGTGCTGTTGGTTCGACTTGGCGTT 3422375 Query 110403 GCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGC 110462 || ||||| ||||||||| | || ||| || || || || | || |||||||| Sbjct 3422376 CGCCGCGTCCTTGTAGAGCATGAAGGGACCACCCGTCTCGGTTTGAGCCTCAAGAATGGC 3422435 Query 110463 CTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTT-----CCTCCTCGTA 110516 ||| | | || | ||| | || | || ||| |||| ||| |||||| Sbjct 3422436 AAACCAGAGCTTCTG-GGCCTTAATGGT--CTTT--CGA-CCCTTGCCAGCCTTCTCGTA 3422489 Query 110517 CTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTC 110576 | ||| | | ||| || | || || ||||| | |||||| || | | Sbjct 3422490 CGACTCGTAGAGCTGCTCGAACTTCTCCGAGTGGACATCGGCAAGACCGGGGCACTCGGC 3422549 Query 110577 GGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAAT 110636 || || | ||| | ||| | || || ||| |||| ||||||||| ||||| | || Sbjct 3422550 AGGGCACATGAGTGTCCACTCGCCGTCCGACTCGACCCGCTTCATGAAGAGGTCCGAGAT 3422609 Query 110637 CCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAG 110696 ||| | || |||| |||||||| ||| |||| || | ||| ||||| ||| || Sbjct 3422610 CCAGAGGGCGTAGAAGAGGTCACGTGCACGGACCTCCTCCTTACCGTGGTTCTTGCGCAG 3422669 Query 110697 CTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTT 110756 || | || || | ||| || | |||||| || ||||| |||| || | | ||| Sbjct 3422670 GTCGAGGAACTCGAAGATGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAACGCGCCCGG 3422729 Query 110757 ACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGG 110813 ||| ||| |||||| || || || || ||||| | ||| | | |||||| || Sbjct 3422730 ACGTTTGTTACCGCCCTGGTCGACGTATCGCGCCGTGGCGTCGAACGCTCGGAGCATGGG 3422789 Query 110814 AATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTC 110873 | || || | || | || || ||||| ||| || ||||| || | | Sbjct 3422790 TACGATACCGTTCGAGTACCCGTTGGTACCGGCAATGTAAGATCCCTTGGCGCGGACATT 3422849 Query 110874 GTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC-TCTGTGAGTG 110932 |||||| || | || || || || || ||| || || || ||| ||| |||| | Sbjct 3422850 GTGGATGTGGAGTCCGATCCCGCCTGCAGTCTTGGAGATCTGCGCGCACGTCT-TGAGGG 3422908 Query 110933 TACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCT 110992 | |||| ||||| |||||||| || |||| | || | || ||||| || ||||| | Sbjct 3422909 TCTCATAGATACCCTCAATCGAGTCGTCCTTCATCGCCACGAGGAAGCAGGATGACATTT 3422968 Query 110993 GAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGG 111026 | || || || || || |||||||| ||||| Sbjct 3422969 GGGGGTTGGGGGTACCGGCGTTGAAGAGGGTAGG 3423002 Score = 114 bits (126), Expect = 2e-20 Identities = 173/246 (70%), Gaps = 9/246 (4%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || || || || ||||| |||||||||||||| || |||| ||||| Sbjct 11614 GGCAAAGTCGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTGAGTCC 11555 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 |||||||| || | ||||| ||||| ||||||| || || || |||||||| Sbjct 11554 GGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAATGAACCCGAGAAGAAGAT 11495 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTC------ 119668 ||||| || ||| || |||| ||||||||||| || | |||||||| Sbjct 11494 ACCCTCGACGGCGGCAAAGGCGATGAGACGCTCAGCGAA---TGTGGACTTGTCGTCCGT 11438 Query 119669 GAACCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTC 119728 || ||||||||| ||||||| ||| || || |||||||||| || | ||||| || Sbjct 11437 GATCCACTTGAGCGCCCAGTCGGCTTTCTTCTTGATGCAGGGGATGGTCTCAATGGCGTC 11378 Query 119729 GAAAAG 119734 || || Sbjct 11377 AAAGAG 11372 >seq11 Length=688241 Score = 89.7 bits (98), Expect = 6e-13 Identities = 226/336 (67%), Gaps = 12/336 (4%) Strand=Plus/Minus Query 11674 TTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733 || |||| |||||||||||||||| || | |||||||||| || ||| || Sbjct 388286 TTCCCGATCGCGTCAATCTCATCGACAAAGATGATACACGGTGCGTGTTTCTTTGC--GT 388229 Query 11734 TCGAAAAGT--TCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG 11791 ||| |||| || || || || | || ||||| || |||||||| ||||| | Sbjct 388228 TCGCAAAGAGATCTCGGACTCGGGATGGACCGACACCGACAAACATCTCGACGAACT--- 388172 Query 11792 CGG--CAGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGA 11848 ||| | | | || || | |||||| || || ||| ||||| | ||| || || | Sbjct 388171 CGGATCCGGATACCGAGAGGAAGGGTACTCCAGCCTCGCCAGCTGTAGCTTTGGCAAGTA 388112 Query 11849 GAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC-A 11907 | || ||||| ||||| || | ||| | || | ||| || || || ||||| || || | Sbjct 388111 GGGTTTTACCGGTACCCGGAGGACCGGAAAGGATGGCACCTCGAGGAATCTTCGCTCCGA 388052 Query 11908 CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTG 11967 || | | || |||||| ||||||||| | |||| |||| || ||||||||| Sbjct 388051 GTTTCTCA-TACTTTGCAGGCTCCTTGAGGAACTTGACAAACTCCATAATCTCCTCCTTG 387993 Query 11968 GCGGAGTCGATACCCTCAACATCGGTGAAACGAGTC 12003 || || || || | ||||| |||| |||||| Sbjct 387992 GCTTCATCCATCCCAGCCACATCCTTGAATCGAGTC 387957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975808582800