Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2 219 5e-52 seq5 89.7 6e-13 >seq2 Length=3428829 Score = 219 bits (242), Expect = 5e-52 Identities = 797/1237 (64%), Gaps = 39/1237 (3%) Strand=Plus/Plus Query 106095 CCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGG 106154 |||| | ||| || || || || |||||| |||| |||||||| ||||||| || Sbjct 3421892 CCCAGAGATCGAACTGGAGTTTACCCTGGGACATGGGGGAACCCTCGTATGTCTCGTACT 3421951 Query 106155 AACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAA 106214 ||| | | | ||||| || || |||||| |||| || || || ||||| || | Sbjct 3421952 TACCCAGCTCCTGAGCCATCTCGCACGACGCCTCGAGGGCGGCATGGTAGATGGTCTCGA 3422011 Query 106215 AGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAA 106269 |||| | || | ||| ||| | || || || |||| |||| || Sbjct 3422012 AGATCTGGATGTTGAGCTCGCGGGCGGCGGGGGACTCGAAGGGCATGCGAAGCGCCA--- 3422068 Query 106270 AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA 106329 |||| | || || ||||| || ||||| | ||| | || | ||| ||||| || || Sbjct 3422069 --TAAAGGCGTCGGCAAGACCCTGGACACCGAGACCGACGGGACGGTGACGCATGTTGGA 3422126 Query 106330 CTTTCGCGCAGTCTCAACG---GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 106386 || |||| ||| | | || || | || | ||||| ||| || || || Sbjct 3422127 GTTCTGCGC---CTCGATGACAGGGTAGTAGTTGCGCGAGATGACCTGGTCAAGGTTCTT 3422183 Query 106387 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 106446 ||| || | ||| |||||||| || || || | | | ||| | || |||| | Sbjct 3422184 GGTGACGACCTTGGTGATTTCGTGGAGCTTCTTAAAGTCATAGACTCGCTTCTCCATGTC 3422243 Query 106447 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 106506 ||| | || ||||||| || || | ||||||||||| ||| || | | Sbjct 3422244 GACGAATGCGGGGAGGGCGAGGGAGGCAAGGTTGCAAACAGCAACCTCGTCGGGGGCAGA 3422303 Query 106507 GTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 106566 |||||| | ||| || ||||| | ||||| || ||||| || | | || |||||| Sbjct 3422304 GTACTCGATAATCTCGGTACAGAGATTGGAGGATTTGATCGTACCGAGGTGCTGTTGGTT 3422363 Query 106567 ACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 106626 ||| ||| ||| ||||||||||||||| |||| |||||||| || || | Sbjct 3422364 CGACTTGGCGTTCGCCGCGTCCTTGTAGAGCATGAAGGGACCACCCGTCTCGGTTTGAGC 3422423 Query 106627 CTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTT--GGCCCGTCCCT- 106682 || ||||| || ||| | | || | | || ||||| || | ||| | || Sbjct 3422424 CTCAAGAATGGCAAACCAGAGCTTCTGGGCCTT----AATGGTCTTTCGACCCTTGCCAG 3422479 Query 106683 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCG--CGTCGGAGAGACC 106740 || ||||||| |||||| || |||| ||| | | | | |||| ||||| Sbjct 3422480 CCTTCTCGTACGACTCGTAGAGCTGCTCGAACTTCTC--CGAGTGGACATCGGCAAGACC 3422537 Query 106741 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 106800 || || | | || || | || | ||| | || || ||| |||||||||||||| Sbjct 3422538 GGGGCACTCGGCAGGGCACATGAGTGTCCACTCGCCGTCCGACTCGACCCGCTTCATGAA 3422597 Query 106801 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTT 106859 ||||| | ||||| |||| | ||||| || | | ||| || |||| || | ||| | Sbjct 3422598 GAGGTCCGAGATCCAGAGGGCGTAGAAGAGGTCACGTGCACGGA-CCTCCTCCTTACCGT 3422656 Query 106860 GGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTG 106919 |||| || | || |||||||| | ||| || |||||||| ||||| || |||| | Sbjct 3422657 GGTTCTTGCGCAGGTCGAGGAACTCGAAGATGTCGGCGTGCCAGGGCTCGAGGTAGATGG 3422716 Query 106920 CGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAA 106973 | | | ||| |||| || | || | || || ||||| ||||||| | Sbjct 3422717 CAAACGCGCCCG---GACGTTTGTTACCGCCCTGGTCGACGTATCGCGCCGTGGCGTCGA 3422773 Query 106974 ATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATT 107033 | | || ||||| || | ||||| | || | || || || || ||| |||| Sbjct 3422774 ACGCTCGGAGCATGGGTACGATACCGTTCGAGTACCCGTTGGTACCGGCAATGTAAGATC 3422833 Query 107034 TATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCG 107093 ||||| | |||| |||||||| | || || || || || ||| ||||| |||| Sbjct 3422834 CCTTGGCGCGGACATTGTGGATGTGGAGTCCGATCCCGCCTGCAGTCTTGGAGATCTGCG 3422893 Query 107094 CACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGA 107153 | ||| | | || || |||||||||| | || ||||| ||||| | || | |||| Sbjct 3422894 CGCACGTCTTGAGGGTCTCATAGATACCCTCAATCGAGTCGTCCTTCATCGCCACGAGGA 3422953 Query 107154 AGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAA 107213 |||| ||||| || || | || ||||| || ||||||||||| || | ||||| Sbjct 3422954 AGCAGGATGACATTTGGGGGTTGGGGGTACCGGCGTTGAAGAGGGTAGGGGAAGCGTGGG 3423013 Query 107214 TGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGT 107273 |||| | | ||||| || ||| ||||| | ||| ||||||| | |||| Sbjct 3423014 TGAAGTATCGCTCAGACATGAGGTTGTAGGTCTCAATGACCTTGTCAATGTTGGCACCGT 3423073 Query 107274 GGATGCCGATGGCCACACGCATAAACATGTATTGGGG 107310 |||| |||| || |||||||||| ||||| ||||| Sbjct 3423074 GGATACCGACAGCGACACGCATAATCATGTGCTGGGG 3423110 Score = 114 bits (126), Expect = 2e-20 Identities = 172/243 (71%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||||||||||||||| || || || || || || |||||| || || Sbjct 11614 GGCAAAGTCGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTGAGTCC 11555 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 ||||||||||| |||||||| | ||| | || | | |||||| || ||||||||||| Sbjct 11554 GGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAATGAACCCGAGAAGAAGAT 11495 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC--- 117449 |||||| || ||||| || | || ||||| ||||| | | ||||| ||| Sbjct 11494 ACCCTCGACGGCGGCAAAGGCGATGAGACGCTCAGCGAATGTG---GACTTGTCGTCCGT 11438 Query 117450 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTC 117509 | ||| || | ||||| | || ||||||| || || || | || | ||||| || Sbjct 11437 GATCCACTTGAGCGCCCAGTCGGCTTTCTTCTTGATGCAGGGGATGGTCTCAATGGCGTC 11378 Query 117510 AAA 117512 ||| Sbjct 11377 AAA 11375 >seq5 Length=1923346 Score = 89.7 bits (98), Expect = 6e-13 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 |||||||||||| ||||| || || ||||| | || ||||| ||||| || ||| Sbjct 661446 CCCTCATCTCGGCTGATAAGCTCGTTCGAGAATGTCAATCCGGGCATCAGACCACGTTTC 661505 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || ||||| | || ||| ||| || || || |||||||| || || ||||||||||| Sbjct 661506 TTTAACCAGAAGATGGCGGCGAAAGATCCCGAAAAGAAGATGCCTTCGACACACGCAAAA 661565 Query 117412 GCAAAAAGGCG--CTCGG 117427 || | |||||| ||||| Sbjct 661566 GCGACAAGGCGTACTCGG 661583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980608256240