Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1 127 5e-24 >seq1 Length=3588805 Score = 127 bits (140), Expect = 5e-24 Identities = 135/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 194963 TGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTT 195022 |||| |||| |||||| | ||||||||| ||||||||||| || ||||| | ||| || | Sbjct 3580098 TGTAGTCGGAAAGAGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAATCGCTGCT 3580157 Query 195023 GGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCG 195082 ||||||| || || || || ||||| ||||| || |||||| || || |||||||| | Sbjct 3580158 GGTCTGGCGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCGG 3580217 Query 195083 AACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || |||||||| | |||||| || || | || || ||||| | ||||| Sbjct 3580218 ACGACTCAACCTCAAGGGTGATCGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 3580275 Score = 114 bits (126), Expect = 3e-20 Identities = 158/220 (72%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 || ||| || ||||| || || ||||| || || |||||||| |||| || || | || Sbjct 3579787 TCGCAAGACGAGGTGCAGTGTTGACTCCTTCTGGATATTGTAGTCGGACAGCGTGCGGCC 3579846 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 |||||||||||| || || || ||||| | ||| ||||||||||| || || || || || Sbjct 3579847 ATCTTCGAGCTGTTTGCCGGCAAAGATCAATCGCTGTTGGTCTGGGGGGATACCCTCCTT 3579906 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTCAAGGGT 195101 ||| || || || ||| || || || |||||||| ||| || || ||||| || Sbjct 3579907 GTCCTGGATCTTCGCCTTTACATTGTCGATGGTGTCGCTCGA---CTCAACCTCAAGAGT 3579963 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | || || || || | ||||| || || | |||||| Sbjct 3579964 GATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCATT 3580003 Score = 93.3 bits (102), Expect = 9e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || ||||||||||| || ||||| || | ||| || |||||||| ||||| || ||| Sbjct 3580392 CCGTCCTCGAGCTGCTTCCCGGCGAAAATCAATCGCTGCTGGTCTGGGGGAATACCCTCT 3580451 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| || || || |||||| || || || ||||| ||| || || ||||| || Sbjct 3580452 TTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCGGAAGACTCGACCTCAAGAGTG 3580511 Query 195103 ACCGTCTTTCCTGT 195116 | |||||||| || Sbjct 3580512 ATAGTCTTTCCGGT 3580525 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/140 (75%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 194963 TGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGT 195021 |||| || | |||| |||| || || || | |||||| || ||||| || | ||| || Sbjct 3580696 TGTAGTCAGACAAG-GTTCGGCCGTCCTCCAACTGCTTGCCGGCGAAAATCAATCGCTGC 3580754 Query 195022 TGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCC 195081 |||||||| ||||| || || ||||| || || || ||||||||| |||||||||||| Sbjct 3580755 TGGTCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCC 3580814 Query 195082 GAACTTTCCACTTCAAGGGT 195101 || || || || ||||| Sbjct 3580815 GAGGACTCAACCTCGAGGGT 3580834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481230403942