Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1 109 4e-19 >seq1 Length=3588805 Score = 109 bits (120), Expect = 4e-19 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | ||| || | ||| | ||| || ||||| || || ||||| || Sbjct 3579776 CCACCCCTCAATCGCAAGACGAGGTGCAGTGTTGACTCCTTCTGGATATTGTAGTCGGAC 3579835 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| || |||||||| |||||||| || | ||| || |||||| | || Sbjct 3579836 AGCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAATCGCTGTTGGTCTGGGGGG 3579895 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | ||||||||||| |||||| || || || | ||||| || | | ||| Sbjct 3579896 ATACCCTCCTTGTCCTGGATCTTCGCCTTTAC--AT--TGTCGATGGTGTCGCTCGACTC 3579951 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || | || |||||||| || ||||| || || |||||||||||||| Sbjct 3579952 AACCTCAAGAGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 3580002 Score = 95.1 bits (104), Expect = 8e-15 Identities = 131/181 (72%), Gaps = 8/181 (4%) Strand=Plus/Plus Query 34806 TAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGG 34865 ||||| ||||| | || |||| |||||||| || || ||||| || | ||| |||||| Sbjct 3580100 TAGTCGGAAAGAGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAATCGCTGCTGG 3580159 Query 34866 TCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TC 34921 ||| |||| | ||||||||||| ||||||| ||||| || | ||||| || Sbjct 3580160 TCTGGCGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGAC--AT--TGTCGATGGTGTC 3580215 Query 34922 ACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | |||||| || | ||| || || || || || || ||||| || ||||||||||| Sbjct 3580216 GGACGACTCAACCTCAAGGGTGATCGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 3580275 Query 34982 A 34982 | Sbjct 3580276 A 3580276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633497131728