Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq4 100 2e-16 seq1 86.0 5e-12 >seq4 Length=1954963 Score = 100 bits (110), Expect = 2e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || ||||| ||| || || || ||||| ||||| || | ||| Sbjct 837939 AGACGCAACACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTCCGA 837880 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || ||||| ||||| || || | ||||| |||||| Sbjct 837879 CCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCTGGGGGAATACCCTCC 837820 Query 48669 TTGTC 48673 ||||| Sbjct 837819 TTGTC 837815 >seq1 Length=3588805 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | ||||| || | || || || ||| || || |||||||| || || Sbjct 3579776 CCACCCCTCAATCGCAAGACGAGGTGCAGTGTTGACTCCTTCTGGATATTGTAGTCGGAC 3579835 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || || | ||| || |||||||| |||| ||||||||| || | ||| Sbjct 3579836 AGCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAATCGCTGTTGGTCTGGGGGG 3579895 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||| |||||| | | | || || ||| ||| Sbjct 3579896 ATACCCTCCTTGTCCTGGATCTTCGCCTTTACATTGTCGATGGTGTCGCTCGACTCAACC 3579955 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| || || | ||||| ||||| |||||||| Sbjct 3579956 TCAAGAGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 3580002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937479290398