Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2 277 3e-69 >seq2 Length=3428829 Score = 277 bits (306), Expect = 3e-69 Identities = 1117/1731 (65%), Gaps = 55/1731 (3%) Strand=Plus/Plus Query 212703 GACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGG 212762 |||| ||||||||| ||||||| || | ||||||||||| ||| |||| | | || Sbjct 3421486 GACTTACTCTGGTCAATGAATGCAGCTCGGTCAGCGGCCAAGTCAATGACTGCCTTTTGA 3421545 Query 212763 GAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTC 212822 || ||||| || |||||| ||||| || ||||| | |||| ||||||||| Sbjct 3421546 CTGATTTCCCAGACAGTCTTGTAGATTGACTTCAGGTCGGCAGGGATAGAGGGGATGTTT 3421605 Query 212823 TGCACAGACCC-CCTGTGT--ATGGTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCC 212879 || | ||| || || | | ||| | || | | ||||| |||| |||||| ||| Sbjct 3421606 TGGATAGAACCGCCAGCGGCAATGATGAGGTTCTT---CATGTTGTCGTCCCAGAGACCC 3421662 Query 212880 CTGGTCTCCAGGCACTTGACCAGGTGAGGGTT-GACTATCTGGAAGTCACCTGAGAGCAC 212938 | | ||| || || | | |||| ||| | |||||| || || || ||||| Sbjct 3421663 AAGTTGATGAGGT-CTCGAAGAAGCCAGGGGCAGACGACCTGGAAATCGCCAGAAAGCAC 3421721 Query 212939 CCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTG 212998 | | ||| | | || ||||||||||||| || |||||| || |||||||| Sbjct 3421722 TCGGCGAGCGTAGAGCATGGATGTGTAGGGCTCGAAGCACTCGTTCCAGCCGAGAATCTG 3421781 Query 212999 TGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCC 213058 | |||| ||| || ||||| || || || ||||| ||| | || ||||||| Sbjct 3421782 GGAAGTGGAGGCGGTAGGCATAGGGGCAACGAGGAGGGAGTTTCGGACACCGTGCTGCTT 3421841 Query 213059 GATG-AGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGT 213117 ||| | || | || | | | ||||||||| | | | || || || || Sbjct 3421842 AATGGAAGCTCGGAGGGTG-GACCAGTCCCAGAGGTCGGTTGGGACC-CGACC------- 3421892 Query 213118 TCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGG 213177 ||| | || ||||| | | || | | || |||| |||| ||| | ||| Sbjct 3421893 -CCAGAGATCGAACTGGAGTTTACCCTGGGACATGGGGGAACCCTCGTATGTCTCGTACT 3421951 Query 213178 GGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAA 213237 || |||||| |||| |||||| ||||||| ||||| || | ||||||||| || | Sbjct 3421952 TACCCAGCTCCTGAGCCATCTCGCACGACGCCTCGAGGGCGGCATGGTAGATGGTCTCGA 3422011 Query 213238 ATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCAT-GCGTTGG 213296 | |||| ||||||||| ||| | |||||| ||||||||| | || | Sbjct 3422012 AGATCTGGATGTTGAGCTCGCGGGCGGCGGGGGACTCGAAGGGCATGCGAAGCGCCATA- 3422070 Query 213297 AACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG 213356 || | || || || |||||||| |||| |||| ||| | ||| | || ||| || || Sbjct 3422071 AAGGCGTCGGCAAGACCCTGGACACCGAGACCGACGGGACGGTGACGCATGTTGGAGTTC 3422130 Query 213357 -GAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGC 213415 | || ||| | ||||| |||||| ||||| || || ||||| |||| | Sbjct 3422131 TGCGC-CTCGATGACAGGGTAGTAGTTGCGCGAGATGACCTGGTCAAGGTTCTTGGTGAC 3422189 Query 213416 CACTTTGGTGACATGGGCCAGGTACTC---GTGATTGAACACGTAGCCCCC-GTCCTGCA 213471 || ||||||| | | || | || || || || | || | || ||| | Sbjct 3422190 GACCTTGGTGATTTCGTGGAGCTTCTTAAAGTCATAGA-CTCGCTTCTCCATGTCG---A 3422245 Query 213472 CAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGT 213531 | || | || ||||||| | ||| ||||||||||| || ||||| | | | | | || Sbjct 3422246 CGAATGCGGGGAGGGCGAGGGAGGCAAGGTTGCAAACAGCAACCTCGTCGGGGGCAGAGT 3422305 Query 213532 ACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTG 213591 |||| || |||||||| || || ||| | || ||| || || |||| ||| ||||| | Sbjct 3422306 ACTCGATAATCTCGGTACAGAGATTGGAGGATTTGATCGTACCGAGGTGCTGTTGGTTCG 3422365 Query 213592 ACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACA 213651 |||| ||||| || | ||||||||||||||| |||| || ||||| || | | Sbjct 3422366 ACTTGGCGTTCGCCGCGTCCTTGTAGAGCATGAAGGGACCACCCGTCTCGGTTTGAGCCT 3422425 Query 213652 CCAGTATCTGGCT--CCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGT 213709 | || || ||| |||||| | | |||||| | | | ||| | | || | Sbjct 3422426 CAAGAAT--GGCAAACCAGAGCTTCTGGGCCTTAATGGTCTTTC-GACCCTTGCCAGCCT 3422482 Query 213710 AGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAG---ACCCTGTCCAGTCC 213766 ||||||| |||||||||| | ||| | | || || || | | || || Sbjct 3422483 T--CTCGTACGACTCGTAGAGCTGCTCGAACTTCT---CCGAGTGGACATCGGCAAGACC 3422537 Query 213767 CGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCAT-CTCTGACTCTCTGCATGA 213825 || || || || |||||||| |||| || ||||| ||| ||| | || ||||| Sbjct 3422538 GGGGCACTCGGCAGGGCACATGAGTGTCCACTCGCCGTCCGACTC-GACCCGCTTCATGA 3422596 Query 213826 ACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAG 213885 | ||||||| || ||| || ||| ||| ||||| | | | ||| ||| || Sbjct 3422597 AGAGGTCCGAGATCCAGAGGGCGTAGAAGAGGTCACGTGCACGGACCTCCTCCTTACCGT 3422656 Query 213886 AGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGG 213945 ||| |||||||| || || || || |||||||| |||||||| ||||| | |||||||| Sbjct 3422657 GGTTCTTGCGCAGGTCGAGGAACTCGAAGATGTCGGCGTGCCAGGGCTCGAGGTAGATGG 3422716 Query 213946 CAAAGGCGCCCGGCC---TCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGA 214002 |||| |||||||| | | || ||||||||||| || | ||| || ||| Sbjct 3422717 CAAACGCGCCCGGACGTTTGTTACCGCCCTGGTCGACGTATCGCGCCGTGGCGTCGAACG 3422776 Query 214003 TGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGG 214062 || || | |||||| | ||||| || | |||||||| || || || || || || Sbjct 3422777 CTCGGAGCATGGGTACGATACCGTTCGAGTACCCGTTGGTACCGGCAATGTAAGATCCCT 3422836 Query 214063 AGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGC 214122 ||| | | ||| ||| ||| || || || || || |||||||||| |||| Sbjct 3422837 TGGCGCGGACATTGTGGATGTGGAGTCCGATCCCGCCTGCAGTCTTGGAGATCTGCGCGC 3422896 Query 214123 AGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGC 214182 | | | | ||||| ||| || | || ||| || | | || | ||||| Sbjct 3422897 ACGTCTTGAGGGTCTCATAGATACCCTCAATCGAGTCGTCCTTCATCGCCACGAGGAAGC 3422956 Query 214183 AGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCA 214242 || || | ||||| ||| | || | |||||| || || ||| || ||| | | Sbjct 3422957 AGGATGACATTTGGGGGTTGGGGGTACCGGCGTTGAAGAGGGTAGGGGAAGCGTGGGTGA 3423016 Query 214243 TAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGA 214302 | | ||| | ||| |||||||||| | ||| | |||| | ||||| Sbjct 3423017 AGTATCGCTCAGACATGAGGTTGTAGGTCTCAATGACCTTGTCAATGTTGGCACCGTGGA 3423076 Query 214303 TCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCTCTATGGGT---CCTTTGGGGC 214359 | | |||| | ||| | |||||||||||| | ||| | | | || ||| || Sbjct 3423077 TACCGACAGCGACACGCATAATCATGTGCTGGGGACGCTCGACGATTTTACCGTTGACGC 3423136 Query 214360 CCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAGGAGTAGG 214410 || |||||||| ||||| || |||||||||||||||||| ||||| Sbjct 3423137 ---GAAGGAGGTAGGATCGCTCGAGGGTCTTGAACCCAAAGTAGTTGTAGG 3423184 Score = 165 bits (182), Expect = 2e-35 Identities = 183/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182 |||| | |||||||||||| |||| | || || || || ||||||| ||||||||| Sbjct 11624 AGAGGAGGCAGGCAAAGTCGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGA 11565 Query 48183 AGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAG 48242 || ||| || ||||||| || | || ||||||||||| || | ||||| || || | Sbjct 11564 AGGTGAGTCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAATGAACCCG 11505 Query 48243 AGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT 48302 |||||||||| ||||| || || || || ||| |||| | ||| |||| | | || | Sbjct 11504 AGAAGAAGATACCCTCGACGGCGGCAAAGGCGATGAGACGCTCAGCGAATGTGGACTTGT 11445 Query 48303 TGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTA 48362 ||| | |||||| ||||||||||| || |||||||||||||| || || ||||| | Sbjct 11444 CGTCCGTGATCCACTTGAGCGCCCAGTCGGCTTTCTTCTTGATGCAGGGGATGGTCTCAA 11385 Query 48363 TGGC 48366 |||| Sbjct 11384 TGGC 11381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532497251840