Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2 275 1e-68 >seq2 Length=3428829 Score = 275 bits (304), Expect = 1e-68 Identities = 819/1247 (66%), Gaps = 41/1247 (3%) Strand=Plus/Plus Query 221406 CGCAAGACTGCGTC-AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTC 221464 |||| ||| || || ||||| || |||||||||||||| |||||| ||||||| ||| Sbjct 3421973 CGCACGAC-GCCTCGAGGGCGGCATGGTAGATGGTCTCGAAGATCTGGATGTTGAG-CTC 3422030 Query 221465 TTGGCCT-CGGGAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTG 221523 || | |||| || ||||||||| || ||| | |||| ||||||| || ||||| Sbjct 3422031 GCGGGCGGCGGGGGACTCGAAGGGCATGCGAAGCGCCATAAAGGCGTCGGCAAGACCCTG 3422090 Query 221524 TACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATA 221583 || |||| ||||| ||| | ||| | | ||||||| ||| || || || || Sbjct 3422091 GACACCGAGACCGACGGGACGGTGACGCATGTTGGAGTTCTGCGCCTCGATGACAGGGTA 3422150 Query 221584 AAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAG 221643 ||||| ||| | | || |||||| |||| ||| || | ||| || Sbjct 3422151 GTAGTTGCGCGAGATGACCTGGTCAAGGTTCTTGGTGACGACCTTGGTGATTTCGTGGAG 3422210 Query 221644 CTTCTGGTGATTGAA--CACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTT 221701 ||||| | || || |||||| | | || || || || ||| Sbjct 3422211 CTTCT------TAAAGTCATAGACTCGCTTCTC-CATG-------TCGACGAATGCGGGG 3422256 Query 221702 AGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATC 221761 ||||| | | ||| ||||| || || || |||||||| | | |||| || ||| Sbjct 3422257 AGGGCGAGGGAGGCAAGGTTGCAAACAGCAACCTCGTCGGGGGCAGAGTACTCGATAATC 3422316 Query 221762 TCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTG 221821 || |||||||| ||| | | ||||| || || ||||| | || || |||||| || Sbjct 3422317 TCGGTACAGAGATTGGAGGATTTGATCGTACCGAGGTGCTGTTGGTTCGACTTGGCGTTC 3422376 Query 221822 GCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTG 221881 || ||||||||||||||||| |||||||| || ||||| |||||| | ||||| Sbjct 3422377 GCCGCGTCCTTGTAGAGCATGAAGGGACCACCCGTCTCGGTTTGAGCCTCAAGAATGGCA 3422436 Query 221882 TCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCT--CGGTCTTTTCATACC 221939 |||||| | ||||| || | | || | ||| || | | | ||| || ||| Sbjct 3422437 AACCAGAGCT-TCTGGGCCTTAATGGTCTTTCGAC----CCTTGCCAGCCTTCTCGTACG 3422491 Query 221940 CGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGG 221999 |||||| || ||||| || || | ||| | || || || ||| ||| | Sbjct 3422492 ACTCGTAGAGCTGCTCGAACTTCTCCGAGTGGACATCGGCAAGACCGGGGCACTCGGCAG 3422551 Query 222000 GACACATCAGACTCCAGTGCTTGTTGTCT---TTGACCCTCTGCATGAAGAGGTCCGGGA 222056 | ||||| || |||| || | ||| | ||||| || |||||||||||||| || Sbjct 3422552 GGCACATGAGTGTCCA---CTCGCCGTCCGACTCGACCCGCTTCATGAAGAGGTCCGAGA 3422608 Query 222057 TCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCA 222116 |||| || || | ||||| || | | || ||||||| |||| ||| || | || Sbjct 3422609 TCCAGAGGGCGTAGAAGAGGTCACGTGCACGGACCTCCTCCTTACCGTGGTTCTTGCGCA 3422668 Query 222117 GATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGG 222176 | || | ||||| || ||||| |||||||| ||||| || |||| ||| | ||||| | Sbjct 3422669 GGTCGAGGAACTCGAAGATGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAACGCGCCCG 3422728 Query 222177 GTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCG 222236 | || ||||| || ||||| || || | | || |||| ||| || || | | Sbjct 3422729 GACGTTTGTTACCGCCCTGGTCGACGTATCGCGCCGTGGCGTCGAACGCTCGGAGCATGG 3422788 Query 222237 GTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGT 222296 |||| | ||||| || |||||||| || |||||| | || ||| | | | Sbjct 3422789 GTACGATACCGTTCGAGTACCCGTTGGTACCGGCAATGTAAGATCCCTTGGCGCGGACAT 3422848 Query 222297 TACTGGCAGACATG-CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGA 222355 | ||| | | ||||| || || || || |||||| ||||| ||||||| Sbjct 3422849 TG-TGGATGTGGAGTCCGATCCCGCCTGCAGTCTTGGAGATCTGCGCGCACGTCTTGAGG 3422907 Query 222356 GTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATC 222415 || || ||| ||||| || ||||| ||||| | || || || || || ||||| Sbjct 3422908 GTCTCATAGATACCCTCAATCGAGTCGTCCTTCATCGCCACGAGGAAGCAGGATGACATT 3422967 Query 222416 TGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTA 222475 || | |||| || || |||||| || || || || ||||| || ||||| | | | Sbjct 3422968 TGGGGGTTGGGGGTACCGGCGTTGAAGAGGGTAGGGGAAGCGTGGGTGAAGTATCGCTCA 3423027 Query 222476 GACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCG 222535 ||||| || | ||| ||||| | ||| || | |||||| | ||||| || | ||| Sbjct 3423028 GACATGAGGTTGTAGGTCTCAATGACCTTGTCAATGTTGGCACCGTGGATACCGACAGCG 3423087 Query 222536 CATCTCATGTACATGTACTGGGGCCTCTCCACAGG---ACCCTTGGAGCTGGAGAGCAGG 222592 | ||| ||||| |||||| | ||| || ||| ||| || || || ||| Sbjct 3423088 ACACGCATAATCATGTGCTGGGGACGCTCGACGATTTTACCGTTGACGC--GA-AGGAGG 3423144 Query 222593 TACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTC 222639 || ||| || || ||||||||||||||||||||| | ||||||| Sbjct 3423145 TAGGATCGCTCGAGGGTCTTGAACCCAAAGTAGTTGTAGGCAAAGTC 3423191 Score = 172 bits (190), Expect = 1e-37 Identities = 242/338 (72%), Gaps = 9/338 (3%) Strand=Plus/Plus Query 25786 CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAG 25845 || |||| ||||| ||| ||| ||| ||||||||| ||| || ||||| | ||| Sbjct 11372 CTCTTTGACGCCATTGAGACCATCCCCTGCATCAAGAAGAAAGCCGACTGGGCGCTCAAG 11431 Query 25846 TGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAG 25905 ||||||| | | | | || || | ||||| || | |||||||| || || ||| Sbjct 11432 TGGATCACGGACGACAAGTCCACATTCGCTGAGCGTCTCATCGCCTTTGCCGCCGTCGAG 11491 Query 25906 GGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATG 25965 || ||||| ||| ||||| || || ||||||||||||||||| || || |||| Sbjct 11492 GGTATCTTCTTCTCGGGTTCATTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATG 11551 Query 25966 CCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTT 26025 ||||| || ||| ||||||||||||||| | || ||||||||||||| || ||| Sbjct 11552 CCCGGACTCACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTCCACACCGACTTT 11611 Query 26026 GCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAA---CCTTCTCAAGAGACCGTCTAC 26082 |||||||| |||| | | |||| |||| || | || | | |||||| || || Sbjct 11612 GCCTGCCTCCTCTTCTC---CCAC---CTCCGCAGACGGCCCTGCCCCGAGACCATCAAC 11665 Query 26083 AGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTT 26120 | |||||||| |||||||| |||| ||| ||||||| Sbjct 11666 AAGATCATCAAGGAGGCTGTAAAGATTGAGCAGGAGTT 11703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844498125440