Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2 181 1e-40 seq5 89.7 6e-13 >seq2 Length=3428829 Score = 181 bits (200), Expect = 1e-40 Identities = 791/1240 (64%), Gaps = 45/1240 (4%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| | ||||| ||||| |||| |||||||| | ||||||| ||| Sbjct 3423110 CCCCAGCACATGATTATGCGTGTCGCTGTCGGTATCCACGGTGCCAACATTGACAAGGTC 3423051 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 | ||||| ||| || ||||| | | |||| ||||| | || ||||||||| Sbjct 3423050 ATTGAGACCTACAACCTCATGTCTGAGCGATACTTCACCCACGCTTCCCCTACCCTCTTC 3422991 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 || || ||||| || | || || ||||| |||||||| | || | ||||| ||| Sbjct 3422990 AACGCCGGTACCCCCAACCCCCAAATGTCATCCTGCTTCCTCGTGGCGATGAAGGACGAC 3422931 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 || || | |||||||||| || || | | ||| ||||| ||||| ||| || || Sbjct 3422930 TCGATTGAGGGTATCTATGAGACCCTCAAGACGTGCGCGCAGATCTCCAAGACTGCAGGC 3422871 Query 75452 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAAT 75511 || || || | |||||||| |||| | ||||| |||| ||| || || || Sbjct 3422870 GGGATCGGACTCCACATCCACAATGTCCGCGCCAAGGGATCTTACATTGCCGGTACCAAC 3422811 Query 75512 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 75571 || | || | ||||| | || ||||| || | || ||||||| ||||| || || Sbjct 3422810 GGGTACTCGAACGGTATCGTACCCATGCTCCGAGCGTTCGACGCCACGGCGCGATACGTC 3422751 Query 75572 AATCAAGCGGGGCGTCGCAA------GGGGTCCATCGCGGTCTACTTGGAACCATGGCAT 75625 | || ||| || ||| ||| | | || ||||| | || || ||||| Sbjct 3422750 GACCA---GGGCGGTAACAAACGTCCGGGCGCGTTTGCCATCTACCTCGAGCCCTGGCAC 3422694 Query 75626 GCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGT 75685 ||||| ||| | |||||||| || | || ||||| ||| | || |||| || ||| Sbjct 3422693 GCCGACATCTTCGAGTTCCTCGACCTGCGCAAGAACCACGGTAAGGAGGAGG-TCCGTGC 3422635 Query 75686 A-GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGG 75744 | | || ||||| | |||| ||||| | ||||| |||||||||||||| ||| || Sbjct 3422634 ACGTGACCTCTTCTACGCCCTCTGGATCTCGGACCTCTTCATGAAGCGGGTCGAGTCGGA 3422575 Query 75745 TGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACG--CGGTGGGT 75802 || | ||| | || | || || | | || || ||||| |||| | | | | Sbjct 3422574 CGGCGAGTGGACACTCATGTGCCCTGCCGAGTGCCCCGGTCTTGCCGATGTCCACTCG-- 3422517 Query 75803 GAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATG--CGACTG 75860 ||| |||| || |||||| ||| | ||| ||| | | ||| | ||| | Sbjct 3422516 GAGAAGTTCGAGCAGCTCTAC---GAGTCGTACGAGAAGGCT---GGCAAGGGTCGAAAG 3422463 Query 75861 TACC----AGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAAC 75915 ||| || | | || | | ||| || ||||| | | || || ||||| || Sbjct 3422462 -ACCATTAAGGCCCAGAAGCTCTGGTTTGCCATTCTTGAGGCTCAAACCGAGACGGGTGG 3422404 Query 75916 ACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAAC 75975 || | ||||| |||||||| || ||| ||| |||||| || | | || || Sbjct 3422403 TCCCTTCATGCTCTACAAGGACGCGGCGAACGCCAAGTCGAACCAACAGCACCTCGGTAC 3422344 Query 75976 AATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGC 76035 ||||| ||| ||||| || || || ||| | |||||| | | || ||| || Sbjct 3422343 GATCAAATCCTCCAATCTCTGTACCGAGATTATCGAGTACTCTGCCCCCGACGAGGTTGC 3422284 Query 76036 TGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTT 76095 ||||||||| | || || ||||||| || | ||| | |||| || | Sbjct 3422283 TGTTTGCAACCTTGCCTCCCTCGCCCTCCCCGCATTCGTCGACATGGAGAAGCGAGTCTA 3422224 Query 76096 TGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCAT 76155 ||| | | | || || || |||||||| ||| | || ||||| || || ||| ||||| Sbjct 3422223 TGACTTTAAGAAGCTCCACGAAATCACCAAGGTCGTCACCAAGAACCTTGACCAGGTCAT 3422164 Query 76156 TGACAGAAATTTTTATCC---CGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACC 76212 | || | || || | | ||| |||| || || || ||||| ||| | || Sbjct 3422163 CTCGCGCAACTACTACCCTGTCATCGAG---GCGCAGAACTCCAACATGCGTCACCGTCC 3422107 Query 76213 TATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCA----- 76267 | ||| | ||||| || ||||| || || | |||| || |||| |||| Sbjct 3422106 CGTCGGTCTCGGTGTCCAGGGTCTTGCCGACGCCTTTA-----TGGCGCTTCGCATGCCC 3422052 Query 76268 TTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCA 76327 || || || | ||| ||| | || | ||||| || ||||| || || || Sbjct 3422051 TTCGAGTCCCCCGCCGCCCGCGAGCTCAACATCCAGATCTTCGAGACCATCTACCATGCC 3421992 Query 76328 TCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGT 76387 |||| |||||| || || ||||| | | | ||| || ||||||| |||||| Sbjct 3421991 GCCCTCGAGGCGTCGTGCGAGATGGCTCAGGAGCTGGGTAAGTACGAGACATACGAGGGT 3421932 Query 76388 TCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGG 76427 || ||| |||||| || || ||||| ||| | |||| Sbjct 3421931 TCCCCCATGTCCCAGGGTAAACTCCAGTTCGATCTCTGGG 3421892 Score = 114 bits (126), Expect = 2e-20 Identities = 172/243 (71%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 64990 TTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGG 65049 ||||| ||||| | || | || || || ||||||| || | ||||| | || ||| Sbjct 11375 TTTGACGCCATTGAGACCATCCCCTGCATCAAGAAGAAAGCCGACTGGGCGCTCAAGTGG 11434 Query 65050 TTT---GACACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAG 65106 | ||| ||||| | | ||||| ||||| || | || ||||| || ||| Sbjct 11435 ATCACGGACGACAAGTC---CACATTCGCTGAGCGTCTCATCGCCTTTGCCGCCGTCGAG 11491 Query 65107 GGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATG 65166 |||||||||||||| || |||||| | | || | ||| | |||||||| ||||||||| Sbjct 11492 GGTATCTTCTTCTCGGGTTCATTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATG 11551 Query 65167 CCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTT 65226 || || || |||||| || || || || || || ||||||||||||||| || ||| Sbjct 11552 CCCGGACTCACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTCCACACCGACTTT 11611 Query 65227 GCC 65229 ||| Sbjct 11612 GCC 11614 >seq5 Length=1923346 Score = 89.7 bits (98), Expect = 6e-13 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 65075 CCGAG--CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTG 65132 ||||| |||||| | || ||||||||||| || || |||||||| || || || ||| Sbjct 661583 CCGAGTACGCCTTGTCGCTTTTGCGTGTGTCGAAGGCATCTTCTTTTCGGGATCTTTCGC 661524 Query 65133 CGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACT 65192 ||| || | ||||| ||||| || ||||| ||||| || | ||||| || || || Sbjct 661523 CGCCATCTTCTGGTTAAAGAAACGTGGTCTGATGCCCGGATTGACATTCTCGAACGAGCT 661464 Query 65193 TATTTCCCGAGATGAGGG 65210 ||| |||||||||||| Sbjct 661463 TATCAGCCGAGATGAGGG 661446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569406114880