Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq2 315 9e-81 seq1 158 2e-33 seq4 152 7e-32 seq3 123 3e-23 seq11 107 3e-18 >seq2 Length=3428829 Score = 315 bits (348), Expect = 9e-81 Identities = 879/1346 (65%), Gaps = 61/1346 (5%) Strand=Plus/Plus Query 195332 TGTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGT 195391 ||||| ||||| |||||| || ||||| ||||||||| | || ||||| || ||||| Sbjct 1821555 TGTGTCGGTGTGTGGCAATCCGACCGTGTCGAGATTATCGCCAACGACCAGGGTAACCGA 1821614 Query 195392 ACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAA 195451 || || || || ||||| ||||| | || || |||||| | |||||||| || || Sbjct 1821615 ACCACCCCCTCCTACGTCGCCTTCAACGACTCGGAGCGTCTCATCGGAGATGCTGCCAAG 1821674 Query 195452 AATCAGACAGCTATGAA-CCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCG 195510 || ||| || ||||| ||||| ||| || || || ||||| ||||| | |||||||| Sbjct 1821675 AACCAGGTCGCCATGAATCCCTA-CAACACCGTTTTCGACGCCAAGCGATTGATTGGTCG 1821733 Query 195511 CAAGTTTTCGGATAAGA--AAGTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTT 195568 || || |||| | | | ||||| | ||| || ||| ||||| | | | ||| | | Sbjct 1821734 TAAATT--CGGAGATGCTGAGGTCCAGGCCGACATGAAGCACTGGCCCT-TCAAGATCAT 1821790 Query 195569 C--CCGGTGTGGCTGATAAGCCTATGATTAATGTTGAATTTCACGGTGAGAAGAAACA-- 195624 | | | ||| |||||||| || | ||||| | | || ||| |||| || Sbjct 1821791 TGACAAGGGAGGC----AAGCCTATCATCCAGGTTGAGTACAAGGGCGAGGAGAAGCAGT 1821846 Query 195625 ----------------------------ATTT--GCT------------CCCGAAGAAAT 195642 |||| ||| ||||| ||||| Sbjct 1821847 TCGTAAGTTGTCATTTTCTGGCGGCGAGATTTTCGCTGACAAGTAGTCCCCCGAGGAAAT 1821906 Query 195643 TTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGT 195702 || || ||||| | ||||||||||||||||| || || | | | | ||| || Sbjct 1821907 CTCCTCCATGGTTCTCATTAAGATGAAGGAGACCGCCGAGGCCTACCTTGGTGGTGTCGT 1821966 Query 195703 GAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAA 195762 | | || || || || || ||||| ||||||| || || || || ||||| || || Sbjct 1821967 CACCAAGGCCGTCGTCACCGTCCCTGCCTACTTCAACGACTCCCAGCGTCAGGCCACCAA 1822026 Query 195763 GGACGCTGCTGCTATTGCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGG 195821 |||||| | | ||| || ||||| | ||| || | || ||||| || || || |||| Sbjct 1822027 GGACGCCGGTCTTATCGCCGGTCTTGA-TGTCCTCCGTATCATCAACGAGCCCACCGCGG 1822085 Query 195822 CTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTG 195881 | || ||||| || ||||| |||||||| || | || || ||||| | ||||| | Sbjct 1822086 CCGCCATTGCCTACGGTCTCGACAAGAAGTCCGAGGGCGAGAAGAATGTCCTCATCTTCG 1822145 Query 195882 ATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAG 195941 ||||||| ||||| || || ||||| || || |||| ||||| | ||||| ||||| | Sbjct 1822146 ATCTCGGAGGTGGAACATTCGATGTTTCCCTGCTCACCATTGAGGAGGGTATCTTCGAGG 1822205 Query 195942 TAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCC 196001 | ||||| || || ||||| ||||| | |||||||| || || || || | || Sbjct 1822206 TCAAGGCCACCGCCGGTGACACTCACTTGGGTGGTGAGGACTTTGACAACCGATTGGTCA 1822265 Query 196002 GTCA-TTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGG 196060 || || ||| | |||||| || ||||| ||||| || | || || || | Sbjct 1822266 ACCACTTCGTC-CAGGAGTTCAAGCGTAAGAACAAGAAGGACTTGTCCTCCAACGCTCGT 1822324 Query 196061 GCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCT 196120 || || ||||| || | || || || || |||||||| ||||| ||||| || | || Sbjct 1822325 GCCCTCCGTCGTCTCCGTACCGCTTGCGAGCGTGCCAAGCGAACCCTCTCCTCCGCCGCC 1822384 Query 196121 CAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACC 196180 || || ||||||| || || | || ||||| | |||||||| || | || ||| Sbjct 1822385 CAGACCTCCATTGAGATCGACTCCCTCTTCGACGGTGTCGACTTCTACACCTCCATCACC 1822444 Query 196181 CGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAA 196240 ||||| || || || ||| | | || | || | ||||| || || || Sbjct 1822445 CGTGCCCGATTCGAGGAGCTCTGCCAGGACCTCTTCCGATCCACCATGGACCCCGTCGAG 1822504 Query 196241 CAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGA 196300 | || || || ||| | ||||| || ||| | || | ||||| |||||||| || Sbjct 1822505 AAGGTCCTCCGCGACTCCAAGATCGACAAGGCCTCCGTCCACGAAATCGTCCTTGTCGGT 1822564 Query 196301 GGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGAT 196360 || || |||||||| || || || || || | | || | |||| | || Sbjct 1822565 GGTTCCACCCGTATCCCCAAAATCCAGAAGCTCGTCTCCGACACCTTCTCTGGCCGTGAG 1822624 Query 196361 TTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCT 196420 |||| | |||||||| ||||| || ||||| || ||||| ||||| |||||||| Sbjct 1822625 CCCAACAGGTCCATCAACCCCGATGAGGCCGTTGCCTACGGTGCCGCCGTCCAGGCTGCC 1822684 Query 196421 ATTCTCTCAGGTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCC 196480 || || | |||| | | | ||| || || ||||| || ||||| || ||| Sbjct 1822685 ATCCTTACCGGTGACACCTCCGAGGCCACCCAGGACCTCCTGCTTCTCGATGTCGCTCCC 1822744 Query 196481 GTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACA 196540 | ||| ||||| | || || || |||||| | |||||| | || | | ||||| Sbjct 1822745 CTCTCCATGGGTATCGAGACCGCCGGTGGTATCATGACTCCCCTCATCAAGCGAAACACC 1822804 Query 196541 ACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTT 196600 || | || || |||||| || |||| || || || ||||| || || || ||||| Sbjct 1822805 ACCGTCCCCACCAAGAAGTCCGAAATCTTCTCCACCTACTCCGACAACCAGCCCGGTGTC 1822864 Query 196601 CATATTCAAGTATATGAAGGAGAACG 196626 | || || || || || || || || Sbjct 1822865 CTCATCCAGGTCTACGAGGGTGAGCG 1822890 >seq1 Length=3588805 Score = 158 bits (174), Expect = 2e-33 Identities = 143/180 (79%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||| ||||| || || |||||||| || || || |||||||| ||||||||||||| Sbjct 3580277 GTATGCAGATCTTCGTCAAGACCCTTACCGGCAAGACGATCACCCTTGAGGTTGAGTCGT 3580218 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | ||||| ||||| || |||| || |||||||| || ||||| || || || || || | Sbjct 3580217 CCGACACCATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCGCCAGACC 3580158 Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 |||| ||| | || ||||||||||| ||||| |||||||| || || || | || |||| Sbjct 3580157 AGCAGCGATTGATCTTTGCTGGTAAGCAGCTGGAAGATGGGCGCACTCTTTCCGACTACA 3580098 Score = 156 bits (172), Expect = 6e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| |||||||| ||||| ||||| ||||| || |||||||||||| Sbjct 3580002 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAAACCATCACTCTTGAGGTTGAGTCGAGC 3579943 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || || ||||| || || ||||| || || || || || || Sbjct 3579942 GACACCATCGACAATGTAAAGGCGAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAA 3579883 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||| | || ||||| || |||||||| |||||||| || || || | || ||||| Sbjct 3579882 CAGCGATTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGCTGTCCGACTACAAT 3579823 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGT 172070 | || |||||||| || || ||||| || Sbjct 3579822 ATCCAGAAGGAGTCAACACTGCACCTCGT 3579794 Score = 129 bits (142), Expect = 8e-25 Identities = 128/166 (77%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 171874 GTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGAT 171933 || || ||||| || || ||||| |||||||||||||||||||| || ||||| || || Sbjct 3580861 GTCAAGACCCTCACCGGCAAAACCATCACCCTCGAGGTTGAGTCCTCGGACACCATTGAC 3580802 Query 171934 AACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATT 171993 ||| |||| |||||||| || || ||||| || ||||| || || ||||| ||| | ||| Sbjct 3580801 AACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGATTGATT 3580742 Query 171994 TTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 || || || || ||| | || || || || ||| | |||| |||| Sbjct 3580741 TTCGCCGGCAAGCAGTTGGAGGACGGCCGAACCTTGTCTGACTACA 3580696 >seq4 Length=1954963 Score = 152 bits (168), Expect = 7e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 171882 CCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAA 171941 |||||| || || || ||||||||||| || || ||||| ||||| ||||| || |||| Sbjct 837742 CCTTACGGGCAAGACGATCACCCTCGAAGTCGAATCGTCCGACACCATCGACAATGTCAA 837801 Query 171942 AGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGG 172001 |||||||| || || ||||| || ||||| || || ||||| || || ||||| || || Sbjct 837802 GGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGTCTGATTTTCGCCGG 837861 Query 172002 TAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCT 172061 || ||||| || || || || ||||| |||| |||||| | || ||||||||||| || Sbjct 837862 CAAGCAGCTGGAGGACGGTCGGACCCTGTCTGACTACAACATCCAGAAGGAGTCTACGCT 837921 Query 172062 ACACCTTGTTCTAAGGCTTCGGGGTGGTG 172090 ||| | || | | || || ||||||| Sbjct 837922 CCACTTGGTGTTGCGTCTGCGTGGTGGTG 837950 >seq3 Length=2003673 Score = 123 bits (136), Expect = 3e-23 Identities = 231/332 (70%), Gaps = 18/332 (5%) Strand=Plus/Plus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 ||||||||||| ||||| ||| | | |||||| | || || | || || | ||| Sbjct 726499 AAGATGAAGGACACTGCCTCTGCTTACCTCGGTAAACCCGTTAAGCACGCCGTCATCACT 726558 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || ||||| ||||||| || || ||||| ||||| ||||||||||| | | ||||| Sbjct 726559 GTCCCTGCCTACTTCAACGACTCCCAACGTCAGGCCACAAAGGACGCCGGGTCCATTGCC 726618 Query 195782 GGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCT 195840 ||||| | ||| || || | ||||| || || ||||| ||||| | ||||| ||||| Sbjct 726619 GGTCTCGA-TGTCCTCCGAGTGATCAACGAGCCCACAGCCGCTGCTCTCGCTTACGGTCT 726677 Query 195841 GGACAAGAACAAGGACGAAGATAAAAATGT-ATTG--ATCTTTGATCTCGGTGGTGGTAC 195897 |||||| | ||| | || |||| ||| |||||||| ||||| || Sbjct 726678 TGACAAGTCC---GACTCGG------CCGTCATTGCCGTCTACGATCTCGGAGGTGGAAC 726728 Query 195898 GTTTGATGTCTCACTTCTCAATAT--TGAAGGTGGTATATTCGAAGTAAAGGCTACTGCT 195955 || |||||||| | ||| | || |||| ||| | || || || ||| |||| Sbjct 726729 TTTCGATGTCTCGATCCTCGAGATGCAGAAG--GGTGTCTTTGAGGTCAAGTCTACCAAC 726786 Query 195956 GGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 ||||||||||| || |||||||| || || || Sbjct 726787 GGTGATACTCACCTTGGTGGTGAGGACTTTGA 726818 Score = 107 bits (118), Expect = 3e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171882 CCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAA 171941 |||||| || || || |||||||||||||| ||||| || ||||| ||||| || |||| Sbjct 927414 CCTTACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACGATCGACAATGTCAA 927355 Query 171942 AGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGG 172001 |||||||| || || ||||| || || || || || ||||| ||| | ||||| || || Sbjct 927354 GGCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAGCAGCGATTGATTTTCGCCGG 927295 Query 172002 TAAACAGCTTGAAGATGGACGTAC 172025 || ||| | || || || || || Sbjct 927294 AAAGCAGTTGGAGGACGGCCGAAC 927271 >seq11 Length=688241 Score = 107 bits (118), Expect = 3e-18 Identities = 220/322 (68%), Gaps = 4/322 (1%) Strand=Plus/Plus Query 198444 ACGCGATTCAAGGATGTTGAGGGTATCGACTCAGCTAAGGATGAGCTCGAGGAGATTGTT 198503 || |||||||||||||| | || || || ||| ||||| ||| | |||| |||| Sbjct 387958 ACTCGATTCAAGGATGTGGCTGGGATGGATGAAGCCAAGGAGGAGATTATGGAGTTTGTC 388017 Query 198504 GATTTTCTTAAAAACCCCGAAAAGTACTATGGAAGT-GGTGCCCGAATCCCACGTGGTGC 198562 | || || || | || | |||||| | | || | || || || || || ||||| Sbjct 388018 AAGTTCCTCAAGGAGCCTGCAAAGTATGA-GAAACTCGGAGCGAAGATTCCTCGAGGTGC 388076 Query 198563 TCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGTGA 198622 | || ||||| | |||||||| ||||||||||| || || |||| || || || Sbjct 388077 CATCCTTTCCGGTCCTCCGGGTACCGGTAAAACCCTACTTGCCAAAGCTACAGCTGGCGA 388136 Query 198623 ATCGAGTGTCCCCTTTCT-TCAGTGCTCCGCGGCGAGTTTCATCGAGATGTTCGTTGGTG 198681 | | || ||||| || || || | | |||||| | |||||||||| || |||| Sbjct 388137 GGCTGGAGTACCCTTCCTCTCGGTATCCGGATCCGAGTT-CGTCGAGATGTTTGTCGGTG 388195 Query 198682 TTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAAAATCAACCATGTATCA 198741 | ||| | || ||||| || ||||||| | | ||| || | ||| ||||||| Sbjct 388196 TCGGTCCATCCCGAGTCCGAGATCTCTTTGCGAACGCAAAGAAACACGCACCGTGTATCA 388255 Query 198742 TCTTCATTGATGAGATTGACGC 198763 |||| | |||||||||||||| Sbjct 388256 TCTTTGTCGATGAGATTGACGC 388277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657862186194720