Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2 203 4e-46 seq5 116 5e-20 >seq2 Length=3428829 Score = 203 bits (224), Expect = 4e-46 Identities = 344/499 (69%), Gaps = 27/499 (5%) Strand=Plus/Plus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||||||||| ||||||||| ||| || | ||||||||||| |||| ||||| Sbjct 3422742 GCCCTGGTCGACGTATCGCGCCGTGGCGTCGAACGCTCGGAGCATGGGTACGATACCGTT 3422801 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 || | |||||||| || || | ||| | || |||||| || ||||| | | Sbjct 3422802 CGAGTACCCGTTGGTACCGGCAATGTAAGATCCCTTGGCGCGGACATTGTGGATGTGGAG 3422861 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 ||||| ||||| || | ||||||||| |||||||| ||||| || || ||||| || Sbjct 3422862 TCCGATCCCGCCTGCAGTCTTGGAGATCTGCGCGCACGTCTTGAGGGTCTCATAGATACC 3422921 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 ||| ||||||||| ||||||| ||||||| ||||| || || |||| |||| | || Sbjct 3422922 CTCAATCGAGTCGTCCTTCATCGCCACGAGGAAGCAGGATGACATTTGGGGGTTGGGGGT 3422981 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361 |||||||||||||| || || | || |||||| | || |||||| || ||| Sbjct 3422982 ACCGGCGTTGAAGAGGGTAGGGGAAGCGTGGGTGAAGTATCGCTCAGACATGAGGTTGTA 3423041 Query 1630362 GGTGGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGC 1630421 ||| | | | | | ||| | || |||| || | | |||| || Sbjct 3423042 GGT------------CTCAATGACCTTGTCAATGTTGGCA---CCGTGGATACCGACAGC 3423086 Query 1630422 GACGCGCATGAGCATGTACTGGGGCCGCTCGACGA------CGACGCCGCGCACCTTGGT 1630475 ||| ||||| | ||||| |||||| |||||||||| || | |||| | || Sbjct 3423087 GACACGCATAATCATGTGCTGGGGACGCTCGACGATTTTACCGTTGACGCGAA----GG- 3423141 Query 1630476 CAGGTAGGACCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTG 1630535 |||||||| || | |||| ||| ||||||||| ||||||| || |||| || Sbjct 3423142 -AGGTAGGATCGCTCGAGGGTCTTGAACCCAAAGTAGTTGTAGGCAAAGTCCCGGTTGTA 3423200 Query 1630536 GCGGATGGCGGCGTCGAGG 1630554 | |||||| | ||||||| Sbjct 3423201 GATGATGGCAGAGTCGAGG 3423219 Score = 190 bits (210), Expect = 2e-42 Identities = 217/287 (76%), Gaps = 7/287 (2%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| || || ||| ||| | |||||| |||| ||| ||||||||||| || ||||| Sbjct 11596 ACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATGAGACCACGCTT 11537 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||||| | ||| |||||||| ||||| ||||||||||||||||| Sbjct 11536 CTTGAGCCAGAAGATGGAGGCGAATGAACCCGAGAAGAAGATACCCTCGACGGCGGCAAA 11477 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 | ||||||| ||||| || || ||| | | ||| |||||||||| | |||||| Sbjct 11476 GGCGATGAGACGCTCAGCGAATGTGGACTTGTCGTCC---GTGATCCACTTGAGCGCCCA 11420 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTTT 869417 |||||| || ||| | | | || | || || |||||| |||||||| ||||| Sbjct 11419 GTCGGCTTTCTTCTTGATGCAGGGGATGGTCTCAATGGCGTCAAAGAGGTAGGTCC--GG 11362 Query 869418 CG-GCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 || || |||||||||| ||||||||||| ||||| || |||||||| Sbjct 11361 CGTGCGGGGTCCTTGATGTAGGTGTCGATGAGGAGGGAGTAGGTCTC 11315 Score = 122 bits (134), Expect = 1e-21 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 1628389 AGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGC 1628448 || ||||| ||||| || || | ||| | ||| ||||| | | | | | || | Sbjct 3422533 AGACCGGGGCACTCGGCAGGGCACATGAGTGTCCACTCGCCGTCCGACTCGACCCGCTTC 3422592 Query 1628449 ATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTG 1628508 || |||||||| | |||| || ||||| |||||||| || || ||| ||||||||| Sbjct 3422593 ATGAAGAGGTCCGAGATCCAGAGGGCGTAGAAGAGGTCACGTGCACGGACCTCCTCCTTA 3422652 Query 1628509 CCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAG 1628568 ||||||||||| |||||||| | |||| |||||||||||||| ||||| |||||| Sbjct 3422653 CCGTGGTTCTTGCGCAGGTCGAGGAACTCGAAGATGTCGGCGTGCCAGGGCTCGAGGTAG 3422712 Query 1628569 CAGGCAAAGGCGCCC 1628583 |||||| |||||| Sbjct 3422713 ATGGCAAACGCGCCC 3422727 >seq5 Length=1923346 Score = 116 bits (128), Expect = 5e-20 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18256 CAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAAC 18315 || || ||||| ||| |||| |||| |||||| ||||| |||| || | ||| |||| Sbjct 521391 CAATCTGGCACAGAGCACGGTGTCACCCTCGGCACGCCCATCGGTCTGCTAGTGCACAAC 521332 Query 18316 CGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGGTGCCGCGGCCCTCACACGCC 18375 |||||||| || ||| || |||| | | || || || || || ||| Sbjct 521331 AAAGACCAGCGACCACACGATTACGCCGAGACGGATCTTTACCCCCGACCGTCGCATGCC 521272 Query 18376 GACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCT 18435 |||||||||||| |||| |||||||| |||||||||| |||||||| || || | || Sbjct 521271 GACTACACCTACCTGGCGAAGTACGGTGTCAAGGCGTCTTCGGGCGGTGGTCGAGCCTCA 521212 Query 18436 GCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAAAT 18484 ||||| ||||| | || || ||||| || || | |||||||||| Sbjct 521211 GCCCGAGAGACTATTGGTCGAGTTGCCGCTGGTGCTATTGCCGAGAAAT 521163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107137066318242