Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2 210 3e-48 >seq2 Length=3428829 Score = 210 bits (232), Expect = 3e-48 Identities = 229/301 (76%), Gaps = 5/301 (2%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| || || ||| ||| | |||||| ||| ||| ||||||||||| || ||||| Sbjct 11596 ACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATGAGACCACGCTT 11537 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||||| ||| |||||||| ||||| ||||||||||||||||| Sbjct 11536 CTTGAGCCAGAAGATGGAGGCGAATGAACCCGAGAAGAAGATACCCTCGACGGCGGCAAA 11477 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | ||| ||| ||||| || || ||| | | || | |||||||||| | |||||| Sbjct 11476 GGCGATGAGACGCTCAGCGAATGTGGACTTG---TCGTCCGTGATCCACTTGAGCGCCCA 11420 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTCT 794578 || || || ||| | | |||| | || || |||||| |||||||| ||||| | Sbjct 11419 GTCGGCTTTCTTCTTGATGCAGGGGATGGTCTCAATGGCGTCAAAGAGGTAGGTCCGGCG 11360 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | | |||||||||| |||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 11359 TG-CGGGGTCCTTGATGTAGGTGTCGATGAGGAGGGAGTAGGTCTCAGAGTGGATGTTTT 11301 Query 794639 C 794639 | Sbjct 11300 C 11300 Score = 172 bits (190), Expect = 9e-37 Identities = 344/509 (68%), Gaps = 27/509 (5%) Strand=Plus/Plus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || ||||||||| || ||||||||| ||| || | ||||||||||| || | ||||| Sbjct 3422742 GCCCTGGTCGACGTATCGCGCCGTGGCGTCGAACGCTCGGAGCATGGGTACGATACCGTT 3422801 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 || | |||||||| || || | ||| | ||| |||||| || ||||| | | Sbjct 3422802 CGAGTACCCGTTGGTACCGGCAATGTAAGATCCCTTGGCGCGGACATTGTGGATGTGGAG 3422861 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 ||||| ||||| || | ||||||||| |||||||| | || || ||||| ||||| || Sbjct 3422862 TCCGATCCCGCCTGCAGTCTTGGAGATCTGCGCGCACGTCTTGAGGGTCTCATAGATACC 3422921 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 ||| ||||||||| ||||||| ||| || ||||| || || |||| ||| | || Sbjct 3422922 CTCAATCGAGTCGTCCTTCATCGCCACGAGGAAGCAGGATGACATTTGGGGGTTGGGGGT 3422981 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTA 2073836 ||||| |||||||| || || | || ||| | | | | |||||| | ||| Sbjct 3422982 ACCGGCGTTGAAGAGGGTAGGGGAAGCGTGGGTGAAGTATCGCTCAGACATGAGGTTGTA 3423041 Query 2073837 GGTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGC 2073896 ||| | | || | ||| | || |||| || | | |||| || Sbjct 3423042 GGTCTCAATGAC---------CTTGTC---AATGTTGGCA---CCGTGGATACCGACAGC 3423086 Query 2073897 GACGCGCATGATCATGTACTGGGGTCGCTCGACGA------CGGCGTCGCGCACCTTGGT 2073950 ||| ||||| ||||||| |||||| |||||||||| || | |||| | || Sbjct 3423087 GACACGCATAATCATGTGCTGGGGACGCTCGACGATTTTACCGTTGACGCGAA----GG- 3423141 Query 2073951 CAGGTAGGACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTG 2074010 |||||||| || |||||| | |||||||| |||||| | ||| || | || Sbjct 3423142 -AGGTAGGATCGCTCGAGGGTCTTGAACCCAAAGTAGTTGTAGGCAAAGTCCCGGTTGTA 3423200 Query 2074011 GCGGATGGCGGCGTCGAGGGCCTCCTTGT 2074039 | |||||| | ||||||| | ||||||| Sbjct 3423201 GATGATGGCAGAGTCGAGGACGTCCTTGT 3423229 Score = 131 bits (144), Expect = 3e-24 Identities = 146/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 2071801 AGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGC 2071860 || ||||| ||||| ||||| | ||| | ||| |||||| | | | | || || | Sbjct 3422533 AGACCGGGGCACTCGGCAGGGCACATGAGTGTCCACTCGCCGTCCGACTCGACCCGCTTC 3422592 Query 2071861 ATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTG 2071920 || || ||||| | |||| ||| |||| ||||| || || || ||| ||||||||| Sbjct 3422593 ATGAAGAGGTCCGAGATCCAGAGGGCGTAGAAGAGGTCACGTGCACGGACCTCCTCCTTA 3422652 Query 2071921 CCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAG 2071980 ||||||||||| ||||||||| | |||| || |||||||||||| ||||| |||||| Sbjct 3422653 CCGTGGTTCTTGCGCAGGTCGAGGAACTCGAAGATGTCGGCGTGCCAGGGCTCGAGGTAG 3422712 Query 2071981 CAGGCAAAGGCGCCC 2071995 |||||| |||||| Sbjct 3422713 ATGGCAAACGCGCCC 3422727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916243634261414