Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1 113 3e-20 seq4 89.7 3e-13 >seq1 Length=3588805 Score = 113 bits (124), Expect = 3e-20 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || |||||||| | || ||| ||||| | || ||||||||| || || ||||| || Sbjct 3579776 CCACCCCTCAATCGCAAGACGAGGTGCAGTGTTGACTCCTTCTGGATATTGTAGTCGGAC 3579835 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| || || || || ||||| ||||||| ||| || |||||| | || Sbjct 3579836 AGCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAATCGCTGTTGGTCTGGGGGG 3579895 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTC 34926 | ||||||||||| | || || || || || | ||||| || | | ||| Sbjct 3579896 ATACCCTCCTTGTCCTGGATCTTCGCCTTTAC--AT--TGTCGATGGTGTCGCTCGACTC 3579951 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||| || ||||| || || |||||||| || |||||||||||||| Sbjct 3579952 AACCTCAAGAGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 3580002 Score = 102 bits (112), Expect = 5e-17 Identities = 132/180 (73%), Gaps = 8/180 (4%) Strand=Plus/Plus Query 34802 TAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGG 34861 ||||| || || ||||| |||| ||||| ||||| || || ||||||| ||| |||||| Sbjct 3580100 TAGTCGGAAAGAGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAATCGCTGCTGG 3580159 Query 34862 TCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TC 34917 ||| |||| | ||||||||||| | || || ||||| || | ||||| || Sbjct 3580160 TCTGGCGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGAC--AT--TGTCGATGGTGTC 3580215 Query 34918 ATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | ||| || |||| ||| || ||||| || || |||||||| || ||||||||||| Sbjct 3580216 GGACGACTCAACCTCAAGGGTGATCGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 3580275 >seq4 Length=1954963 Score = 89.7 bits (98), Expect = 3e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || ||| | || | || ||||| ||||| |||||||| Sbjct 837913 CTCCTTCTGGATGTTGTAGTCAGACAGGGTCCGACCGTCCTCCAGCTGCTTGCCGGCGAA 837854 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| || ||||||||| | || | ||||||||||| Sbjct 837853 AATCAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTC 837815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692696796094