Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1 109 4e-19 seq4 87.8 1e-12 >seq1 Length=3588805 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || |||||||| |||| || | || || || || || || || || || || || | Sbjct 3579776 CCACCCCTCAATCGCAAGACGAGGTGCAGTGTTGACTCCTTCTGGATATTGTAGTCGGAC 3579835 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| ||||| |||||||| ||| | ||||||| || || || || || Sbjct 3579836 AGCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAATCGCTGTTGGTCTGGGGGG 3579895 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | || || ||| | || | ||||| || || Sbjct 3579896 ATACCCTCCTTGTCCTGGATCTTCGCCTTTACATTGTCGATGGTGTCGCTCGACTCAACC 3579955 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||||| || ||||||||||| | |||||| ||||| ||||||||| Sbjct 3579956 TCAAGAGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCATT 3580003 >seq4 Length=1954963 Score = 87.8 bits (96), Expect = 1e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||||| |||||| || ||||| || || || || ||||| || || | Sbjct 837948 CCACCACGCAGACGCAACACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAC 837889 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| ||| || || || || ||||| || | |||| | ||||| || || ||| Sbjct 837888 AGGGTCCGACCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCTGGGGGA 837829 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | || |||||| | || | ||||| || ||| ||| Sbjct 837828 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGACGATTCGACT 837769 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGG 29767 || || || || || ||||| | ||||| Sbjct 837768 TCGAGGGTGATCGTCTTGCCCG-TAAGG 837742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385219077933666