Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2 259 5e-64 seq1 102 8e-17 seq4 91.5 1e-13 seq3 91.5 1e-13 >seq2 Length=3428829 Score = 259 bits (286), Expect = 5e-64 Identities = 831/1269 (65%), Gaps = 43/1269 (3%) Strand=Plus/Plus Query 148533 GCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTG 148592 |||| ||||| ||||||||| ||| | | ||| || |||||| || || ||||| Sbjct 3421966 GCCATCTCGCACGACGCCTCGAGGGCGGCATGGTAGATGGTCTCGAAGATCTGGATGTTG 3422025 Query 148593 AGCAGCGCCGCCGACTCGCTT-TCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAG 148651 ||| ||| | || | | ||| | ||||| || ||| || ||| ||||||||||| Sbjct 3422026 AGCT-CGCGGGCGGCGGGGGACTCGAAGGGCATGCGAAGCGCCATAAAGGCGTCGGCAAG 3422084 Query 148652 GCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTC-GA 148710 ||||| || || | || | ||| ||||| ||||||||| |||| ||| || Sbjct 3422085 ACCCTGGACACCGAGACCGACGGGACGGTGACGCATGTTGGAGTTCTGCGC-CTCGATGA 3422143 Query 148711 GCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTC 148770 || |||| |||||| ||||| || |||||| || || ||||| || ||| Sbjct 3422144 CAGGGTAGTAGTTGCGCGAGATGACCTGGTCAAGGTTCTTGGTGACGACCTTGGTGATTT 3422203 Query 148771 TGCGCAGCAATTCAAAATCGTA------CTTGTC-ATCTACGATGCATCGGTTCACGGCG 148823 | | ||| | ||| || || ||| || || | ||| | || | | |||| Sbjct 3422204 CGTGGAGCTTCTTAAAGTCATAGACTCGCTTCTCCATGT-CGACGAATGCGGGGAGGGCG 3422262 Query 148824 ATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCG 148883 | ||||| || ||||| || || ||| || ||||| |||||| | ||||||| Sbjct 3422263 AGGGAGGCAAGGTTGCAAACAGCAACCTCGTCGGGGGCAGAGTACTCGATAATCTCGGTA 3422322 Query 148884 CACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCG 148943 || |||||| | |||||||| || | || || ||| || |||| ||| |||| Sbjct 3422323 CAGAGATTGGAGGATTTGATCGTACCGAGGTGCTGTTGGTTCGACTTGGCGTTCGCCGCG 3422382 Query 148944 TCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG--AACCGAT 149001 |||||||| |||||| | || || || || || || | || | ||| || | | Sbjct 3422383 TCCTTGTAGAGCATGAAGGGACCACCCGTCTCGGTTTGAGCCTCAAGAATGGCAAACCAG 3422442 Query 149002 GCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCT------CCTGCTCGTATAAAG 149055 || | ||| || ||| || || | ||||||| ||| |||||| | Sbjct 3422443 --AGCTTCTGGGC-----CTTAATGGTCTTT-CGACCCTTGCCAGCCTTCTCGTACGACT 3422494 Query 149056 TATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGC 149115 || ||| |||||||| ||| || | |||| | ||||||||||||| | |||| Sbjct 3422495 CGTAGAGCTGCTCGAACTTCTCCGAGTGGACATCGGCAAGACCGGGGCACTCGGCAGGGC 3422554 Query 149116 ACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGA 149175 ||||||| | |||| ||||||||| | || |||||||| || || || | | ||||| Sbjct 3422555 ACATGAGTGTCCACTCGCCGTCCGACTCGACCCGCTTCATGAAGAGGTCCGAGATCCAGA 3422614 Query 149176 GCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGA 149235 | ||||| | |||||| || || | || || || ||| |||||||| || Sbjct 3422615 GGGCGTAGAAGAGGTCACGTGCACGGACCTCCTCCTTACCGTGGTTCTTGCGCAGGTCGA 3422674 Query 149236 GCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCT 149295 | | ||| ||||| |||||||| ||||| | ||| | || | ||||||| || | Sbjct 3422675 GGAACTCGAAGATGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAACGCGCCCGGACGTT 3422734 Query 149296 TG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAA 149352 || |||||||||||||||| ||| || || || ||| |||| | ||| ||| | | Sbjct 3422735 TGTTACCGCCCTGGTCGACGTATCGCGCCGTGGCGTCGAACGCTCGGAGCATGGGTACGA 3422794 Query 149353 TGCCACTGGCAGT-GCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGC 149411 | || | | ||| ||||| ||| | |||| | || || || || ||||| Sbjct 3422795 TACCGTTCG-AGTACCCGTTGGTACCGGCAATGTAAGATCCCTTGGCGCGGACATTGTGG 3422853 Query 149412 ACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCA-GTCGCCGAGCGTCG 149469 | || || ||||| ||||| || || ||| ||||| |||||| ||| ||| ||| Sbjct 3422854 ATGTGGAGTCCGATCCCGCCTGCAGT-CTTGGAGATCTGCGCGCACGTC-TTGAGGGTCT 3422911 Query 149470 AGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCG 149529 ||||| ||||| || |||| |||||| | || || ||||| || ||||||| | Sbjct 3422912 CATAGATACCCTCAATCGAGTCGTCCTTCATCGCCACGAGGAAGCAGGATGACATTTGGG 3422971 Query 149530 GAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCA 149589 | | || ||||| ||| | ||| ||| ||||| || || ||| || || Sbjct 3422972 GGTTGGGGGTACCGGCGTTGAAGAGGGTAGGGGAAGCGTGGGTGAAGTATCGCTCAGACA 3423031 Query 149590 TCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGC 149649 | | | ||| | ||| | || ||| |||| | || ||||| || | ||||| | Sbjct 3423032 TGAGGTTGTAGGTCTCAATGACCTTGTCAATGTTGGCACCGTGGATACCGACAGCGACAC 3423091 Query 149650 GCATCAGCATATGCTGCGGTCGCTCCGCCACTTT---GTTTCCAATTTTGAGCAAGTAGC 149706 |||| | ||| ||||| || ||||| | | ||| ||| | || | |||| Sbjct 3423092 GCATAATCATGTGCTGGGGACGCTCGACGATTTTACCGTT---GACGCGAAGGAGGTAGG 3423148 Query 149707 CGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGG 149766 || || |||||| | |||||||| |||||| ||||||| ||| || | |||| Sbjct 3423149 ATCGCTCGAGGGTCTTGAACCCAAAGTAGTTGTAGGCAAAGTCCCGGTTGTAGATGATGG 3423208 Query 149767 CGGCGTCGA 149775 | | ||||| Sbjct 3423209 CAGAGTCGA 3423217 Score = 111 bits (122), Expect = 2e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| |||||||| ||||| || ||||| || || || || ||||||||| || || Sbjct 11619 AGGCAGGCAAAGTCGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTG 11560 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759 || |||||||||| || | |||||| |||| |||| ||| || ||||| ||| Sbjct 11559 AGTCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAATGAACCCGAGAAG 11500 Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTG-CT 120818 || | ||||| ||| ||||||||||| | ||||| || || || | | | | | | Sbjct 11499 AAGATACCCTCGACGGCGGCAAAGGCGATGAGACGCTCAGCGAATGTGGACTTGTCGTCC 11440 Query 120819 GTCGATCCACTTCATGGCCCACTCGGCCTTTTT 120851 || ||||||||| | ||||| ||||| || || Sbjct 11439 GT-GATCCACTTGAGCGCCCAGTCGGCTTTCTT 11408 >seq1 Length=3588805 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||| | ||||||||| ||| |||| | ||||||||||| || || || || ||||| Sbjct 3580718 GTCCTCCAACTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTT 3580777 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | |||| ||||| | || ||| || |||| ||||| Sbjct 3580778 GTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGAT 3580837 Query 133625 GGTTTTGCCGGTCAGAGTTTTTAC 133648 |||||||||||| || || || || Sbjct 3580838 GGTTTTGCCGGTGAGGGTCTTGAC 3580861 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || |||||||| || || | || | ||||||||||| || ||||| || |||||| Sbjct 3580121 TCTTCCAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCTGGCGGGATACCCTCCTTG 3580180 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| ||||| | || | ||||||| | ||| || || | ||||| Sbjct 3580181 TCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCGGACGACTCAACCTCAAGGGTGATC 3580240 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||||||| || || || ||||| |||||||| Sbjct 3580241 GTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 3580275 >seq4 Length=1954963 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || || || ||| |||||| ||||||||||| Sbjct 837918 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTCCGACC-GTCCTCCAGCTGCTTGCC 837860 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| || ||||||||||| || || || || |||||||| |||||| ||| Sbjct 837859 GGCGAAAATCAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTT 837800 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639 || | || | ||||||| | || || |||| ||||| || ||||| || || Sbjct 837799 GACATTGTCGATGGTGTCGGACGATTCGACTTCGAGGGTGATCGTCTTGCCCGTAAG 837743 >seq3 Length=2003673 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||| | |||||| || ||| |||| | ||||||||||| || ||||| || ||||| Sbjct 927279 GTCCTCCAACTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCTGGGGGGATACCCTCCTT 927338 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | |||||| | || ||| || |||| ||||| Sbjct 927339 GTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGAT 927398 Query 133625 GGTTTTGCCGGTCAG 133639 ||| ||||| || || Sbjct 927399 GGTCTTGCCCGTAAG 927413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420642888240