Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq4 127 2e-24 seq1 116 3e-21 >seq4 Length=1954963 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||||||||| || | |||| |||||| || |||||||| || | | Sbjct 837948 CCACCACGCAGACGCAACACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAC 837889 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| ||||||||||| || || || |||| ||||||||||| | ||| Sbjct 837888 AGGGTCCGACCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCTGGGGGA 837829 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| |||||| ||| | | | | | |||||| |||||| || Sbjct 837828 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGACGATTCGACT 837769 Query 35690 TCCACCGTGATCGTTTTACCCGT 35712 || | |||||||| || ||||| Sbjct 837768 TCGAGGGTGATCGTCTTGCCCGT 837746 >seq1 Length=3588805 Score = 116 bits (128), Expect = 3e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || ||||| |||| || || || | || || ||||| || || ||||| Sbjct 3579811 CTCCTTCTGGATATTGTAGTCGGACAGCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAA 3579870 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||| ||||| | || | | |||||||||| |||||| ||| | | | Sbjct 3579871 GATCAATCGCTGTTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTTACATT 3579930 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||||||||| || ||||| | ||||| ||||| || || | ||||| || Sbjct 3579931 GTCGATGGTGTCGCTCGACTCAACCTCAAGAGTGATGGTTTTGCCAGTGAGGGTTTTGAC 3579990 Query 35725 AAATATCTGCATTC 35738 ||| |||||||||| Sbjct 3579991 AAAGATCTGCATTC 3580004 Score = 96.9 bits (106), Expect = 3e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 35559 TGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCT 35618 |||| |||| | || ||| | || |||||||||||||| ||||| ||||| ||||||| Sbjct 3580098 TGTAGTCGGAAAGAGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAATCGCTGCT 3580157 Query 35619 GGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGC 35678 |||| | || | | |||||||||| ||||| ||| | | | | | |||||| Sbjct 3580158 GGTCTGGCGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCGG 3580217 Query 35679 TCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| || ||||| | |||||||| || || || | || || || || |||||||| Sbjct 3580218 ACGACTCAACCTCAAGGGTGATCGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 3580275 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||||||||| || | || |||||||| || |||||||| ||| | Sbjct 3579500 CCACCACGAAGACGCAACACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 3579559 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || | | |||| ||||||||||| || ||||| || | ||||||||||| | ||| Sbjct 3579560 AACGTCCTCCCGTCCTCCAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGA 3579619 Query 35630 ACGCTCTCCTTG 35641 | | |||| || Sbjct 3579620 ATACCCTCCCTG 3579631 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/155 (73%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 35559 TGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCT 35618 |||| || | ||||||||| |||| |||| |||||| || || || ||||| ||||||| Sbjct 3580696 TGTAGTCAGACAAGGTTCGGCCGTCCTCCAACTGCTTGCCGGCGAAAATCAATCGCTGCT 3580755 Query 35619 GGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCG 35677 |||| | |||| | |||||||||| |||||| ||| | |||| | | ||||| Sbjct 3580756 GGTCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCC 3580814 Query 35678 CTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 || || ||||| | ||||| ||||| || || Sbjct 3580815 GAGGACTCAACCTCGAGGGTGATGGTTTTGCCGGT 3580849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793453492080