Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioszegia_20crocea_20[genbank_20GCA_5F001600615.1_202016-03-01] 26 sequences; 20,595,339 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1 118 1e-21 seq4 116 4e-21 >seq1 Length=3588805 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || | |||||| |||||||| || || || ||||| || || ||||||||| Sbjct 3579776 CCACCCCTCAATCGCAAGACGAGGTGCAGTGTTGACTCCTTCTGGATATTGTAGTCGGAC 3579835 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || |||||||||||||| ||||| ||||| ||||| || || || || Sbjct 3579836 AGCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAATCGCTGTTGGTCTGGGGGG 3579895 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || || || ||| | |||||| ||| || || Sbjct 3579896 ATACCCTCCTTGTCCTGGATCTTCGCCTTTACATTGTCGATGGTGTCGCTCGACTCAACC 3579955 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || ||||| |||||||| || || | ||||| || || || |||||| Sbjct 3579956 TCAAGAGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCATT 3580003 Score = 91.5 bits (100), Expect = 1e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 134536 TGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCT 134595 |||||||| || ||| | || || ||||| || || ||||| ||||| ||||||| Sbjct 3580098 TGTAGTCGGAAAGAGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAATCGCTGCT 3580157 Query 134596 GATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGG 134655 | || ||||| || || || || || ||||| || ||||| ||| | ||||||| Sbjct 3580158 GGTCTGGCGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCGG 3580217 Query 134656 ACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||| || || || || || || || || ||||| | || || ||||| || ||||| Sbjct 3580218 ACGACTCAACCTCAAGGGTGATCGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 3580275 >seq4 Length=1954963 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||||||| | ||| ||||| || ||||| || ||||||||||| | ||| || Sbjct 837939 AGACGCAACACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTCCGA 837880 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || ||||||| ||||||||| || || || || || || Sbjct 837879 CCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCTGGGGGAATACCCTCC 837820 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | |||||||||||||| || ||||| || Sbjct 837819 TTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGACGATTCGACTTCGAGGGTG 837760 Query 134676 ATGGTTTTACCGGT 134689 || || || || || Sbjct 837759 ATCGTCTTGCCCGT 837746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398235745520